Transcriptomic and presence/absence variation in the barley genome assessed from multi-tissue mRNA sequencing and their power to predict phenotypic traits

Table 2 Linkage disequilibrium between expression presence/absence variation (ePAV) and sequence variants (SV)

r ²	[1.0,0.8]	(0.8,0.6]	(0.6,0.4]	(0.4,0.2]	(0.2,0]
	Percentage of r\(^{2}_{max}\) between ePAV and SV
linked	0.0	0.0	17.5	49.9	31.1
unlinked	0.0	0.1	23.4	54.0	22.1
	Percentage of r\(^{2}_{max}\) between closest SV beside ePAV and SV
linked	0.0	34.1	52.9	12.9	0.0
unlinked	0.0	21.1	52.7	25.2	0.0

Percentage of expression presence/absence variant or its closest neighboring sequence variant that show a maximum linkage disequilibrium estimate r\(^{2}_{max}\) to the SV 100 kb up and downstreams of it (linked) or outside that interval (unlinked) for five r² classes.

ISSN: 1471-2164