Skip to main content

Table 4 Cloning and functional analysis of regulatory genes of the phenylpropanoid pathway in R. genevieri and R. idaeus cv. Prestige

From: RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

Species

Gene function (Subgroup)

Cloned genea

Transient / Stable transformationb

R. genevieri

R2R3-type MYB TF (SG6)

RgMyb10 (654 nt/217 aa; KY111315)

T / S

R2R3-type MYB TF (SG7)

RgMyb12 (1296 nt/431 aa; KY111316)

T / S

PhAN1-like bHLH TF (SG IIIf-1)

RgAn1-1 (2100 nt/699 aa; KY123749)

T / -

PhAN1-like bHLH TF (SG IIIf-1)

RgAn1-2 (2103 nt/700 aa; KY123750)

T / S

PhAN1-like bHLH TF (SG IIIf-1)

RgAn1-3 (2100 nt/699 aa; KY123751)

T / S

AmDEL-like bHLH TF (SG IIIf-2)

RgDel (1929 nt/642 aa; KY111317)

T / S

WD40-repeat protein

RgTTG1-1 (1041 nt/346 aa; MH460860)

T / S

WD40-repeat protein

RgTTG1-2 (1041 nt/346 aa; MH460861)

T / -

R. idaeus cv. Prestige

R2R3-type MYB TF (SG6)

RiMyb10 (654 nt/217 aa; KY111313)

T / S

R2R3-type MYB TF (SG7)

RiMyb12 (1272 nt/423 aa; KY111314)

T / S

PhAN1-like bHLH TF (SG IIIf-1)

RiAn1 (2100 nt/699 aa; KY111320)

T / S

AmDEL-like bHLH TF (SG IIIf-2)

RiDel-1 (1926 nt/641 aa; KY111318)

T / -

AmDEL-like bHLH TF (SG IIIf-2)

RiDel-2 (1929 nt/642 aa; KY111319)

T / -

WD40-repeat protein

RiTTG1 (1035 nt/344 aa; MH460862)

T / -

  1. aCloned gene name (nucleotide / amino acid length; GenBank accession number)
  2. bTransient assays (T) / stable transformation (S) were conducted in N. benthamiana