Table 1 Summary of SnpEff variant analysis of Djallonke and Sahelian sheep genomes
| Â | Djallonke all variants | Sahelian all variants | Djallonke SNP only | Sahelian SNP only |
|---|---|---|---|---|
Number of variants | 12,821,836 | 12,654,761 | 11,100,619 | 10,978,689 |
Number of known variants | 10,764,740 (83.956%) | 10,671,465 (84.328%) | 10,460,303 (94.232%) | 10,372,765 (94.481%) |
Number of multi-allelic entries | 9235 | 9199 | 5546 | 5534 |
Number of effects | 14,652,590 | 14,454,278 | 12,641,434 | 12,496,971 |
Variant rate | 1 per 191 bases | 1 per 193 bases | 1 per 220 bases | 1 per 223 bases |
Ts/Tv ratio | 2.4736 | 2.4819 | 2.4736 | 2.4819 |