Analysis of pooled genome sequences from Djallonke and Sahelian sheep of Ghana reveals co-localisation of regions of reduced heterozygosity with candidate genes for disease resistance and adaptation to a tropical environment

Yaro, M.; Munyard, K. A.; Morgan, E.; Allcock, R. J. N.; Stear, M. J.; Groth, D. M.

doi:10.1186/s12864-019-6198-8

Table 5 Regions of reduced heterozygosity (RORH) in Djallonke and Sahelian sheep co-localised with reported candidate genes for resistance to nematodes

From: Analysis of pooled genome sequences from Djallonke and Sahelian sheep of Ghana reveals co-localisation of regions of reduced heterozygosity with candidate genes for disease resistance and adaptation to a tropical environment

Sheep breed	Genomic region (bp) co-localised with RORH (Oar_v3.1)	Candidate Gene	Trait Inference	Reference
Both	20:25,400,738-25,402,966	MHCII-DRB1	Gastrointestinal nematodes	Schwaiger et al. (1995)
Djallonke	1:27,524,283-27,601,025	LRP8	H. contortus	Benavides et al. (2016)
Djallonke	1:87,657,990-87,674,113	DENND2D	H. contortus	McRae et al. (2014)
Djallonke	1:87,710,082-87,728,410	CHI3L2	H. contortus	McRae et al. (2014)
Djallonke	1:87,788,905-87,811,255	CHIA	H. contortus	McRae et al. (2014)
Djallonke	3:151,527,165-151,535,188	IFNG	Mixed intestinal parasites	Coltman et al., 2001
Djallonke	3:123,851,175-125,982,479	ATP2B1	H. contortus	Benavides et al. (2016)
Djallonke	8:62,006,022-62,039,859	IL20RA	H. contortus + others	Periasamy et al., 2014
Both	12:41,923,922-41,973,979	PIK3CD	H. contortus + others	Periasamy et al., 2014
Djallonke	12:62,163,057-62,283,591	LAMC1	H. contortus	Benavides et al. (2016)
Both	15:55,404,807-55,417,235	MUC15	H. contortus	Benavides et al. (2016)
Djallonke	17:52,168,248-52,191,479	ABCB9	H. contortus	Yang et al., 2015
Djallonke	10:11,465,154-11,505,274	SUGT1	H. contortus	Yang et al., 2015
Djallonke	14:48,062,306-48,071,138	PAK4	H. contortus	Yang et al., 2015
Djallonke	14:14,206,784-14,215,316	FCER2	H. contortus	Yang et al., 2015
Djallonke	4:44,668,137-45,205,142	RELN	H. contortus	McRae et al., 2014
Djallonke	6:89,053,717-89,061,196	AREG	H. contortus	Zhengyu et al., 2016
Djallonke	11:57,796,766-57,800,093	SOX9	H. contortus	Benavides et al., 2016
Djallonke	6:70,189,729-70,234,612	KIT	H. contortus	Zhengyu et al., 2016
Djallonke	16:66,450,575-66,482,861	NSUN2	H. contortus	McRae et al., 2014
Both	19:47,044,394-47,059,322	IL17RB	H. contortus	Zhengyu et al., 2016
Djallonke	19:55,173,564-55,175,033	HRH1	H. contortus	McRae et al., 2014
Djallonke	25:44,535,996-44,543,183	CXCL12	H. contortus	Zhengyu et al., 2016
Djallonke	19:53,290,059-53,291,096	CXCR6	H. contortus	Zhengyu et al., 2016
Djallonke	20:34,055,201-34,055,659	UBE2N	H. contortus	Benavides et al., 2016

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