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Table 5 Majorb QTLs for the fiber quality traits identified in the RIL population phenotyped at the Central Crops Research Station, Clayton, NC in years 2016 and 2017

From: High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutum L.)

Phenotypic Traitc

QTL

Year

Range

Peak

LOD

PVEd

AEe

MIC

qMIC-CH10-A5–1a

16

233.43–252.01

244.08

11.4

16.2

−0.25

17

233.43–252.01

243.58

9.1

16.2

−0.207

qMIC-CH24-D3–1a

16

71.47–87.7

81.76

16.3

25.8

0.335

17

68.4–87.7

78.81

12.5

23

0.256

qMIC-CH25-D12–1a

16

102.67–109.11

104.67

3.3

4.1

0.128

17

92.32–112.58

102.67

6.1

10

0.167

qMIC-16-CH3-A3–1

16

78.61–95.33

88.82

11.7

17.2

0.344

qMIC-16-CH6-D7–1

16

0–15.09

3

7

19.3

0.274

UHM

qUHM-16-CH5-D11–1

16

0–4.58

0

6.5

11.2

−0.028

qUHM-16-CH7-A7–1

16

43.66–65.19

55.42

6.9

12.1

0.029

qUHM-17-CH7-A7–1

17

17.16–35.23

22.56

6.1

10.1

0.027

qUHM-17-CH23-A2–1

17

132.16–142.33

142.33

6.6

10.2

0.028

qUHM-16-CH24-D3–1

16

123.73–142.8

134.44

6.7

11.9

0.028

UI

qUI-CH3-A3–1a

16

46.82–68.03

58.14

10.4

21

−0.921

17

46.82–68.03

55.53

3.5

6

−0.386

qUI-CH11-A10–1a

16

30.34–52.37

42.28

8.4

16.1

0.9

17

46–50.81

46

2.8

4.9

0.362

qUI-16-CH4-A11–1

16

207.88–227.03

220.88

7.4

13

0.72

qUI-16-CH10-A5–1

16

11.59–19.17

17.67

7.2

12.7

0.732

qUI-17-CH21-D2–1

17

6.05–24.36

17.12

6.1

10

0.488

qUI-17-CH26-D6–1

17

28.88–46.13

39.93

7

13.1

−0.596

STR

qSTR-CH2-A13–1a

16

107.73–118.93

112.84

4.9

7.3

0.639

17

101.54–118.93

111.34

7.2

11.9

0.767

qSTR-CH19-D1–1a

16

121.23–124.72

124.72

3.6

5.2

−0.519

17

112.85–133.39

121.23

7.3

11.8

−0.726

qSTR-CH25-D12–1a

16

98.22–115.15

108.63

9.4

15.6

−0.936

17

101.68–121.15

110.59

7.3

11.5

−0.701

qSTR-17-CH14-A8–1

17

8.8–28.94

21.46

7.5

11.9

0.736

ELO

qELO-CH4-A11–1a

16

156.02–172.58

167.72

4.7

7.1

−0.385

17

156.02–181.46

172.58

8.7

13.5

−0.562

qELO-CH8-A9–1a

16

58.29–74.89

68.12

7.7

12.3

0.507

17

65.15–85.78

71.03

5.3

7.5

0.437

qELO-CH19-D1–1a

16

124.72–137.87

136.4

7.7

12.4

0.499

17

126.74–137.87

136.4

5.6

8.1

0.428

qELO-17-CH23-A2–1

17

132.16–142.33

142.33

7

11.2

−0.503

SFC

qSFC-CH3-A3–1a

16

44.13–59.15

58.64

3.9

7.9

0.664

17

46.82

46.82

2.5

18.4

0.807

qSFC-17-CH2-A13–1

17

36.99

36.99

3.6

20.6

−0.837

qSFC-16-CH4-A11–1

16

217.44–227.03

226.53

7.4

12.4

−0.811

qSFC-17-CH5-D11–1

17

176.37

176.37

3.1

20.1

−0.828

qSFC-17-CH18-A6–1

17

57.29

57.29

3.2

20.4

−0.827

  1. aQTLs identified in both years. bMajor QTLs: The QTLs with at least 1 year’s PVE > 10%. cMIC, micronaire; UHM, upper half mean; UI, uniformity index; STR, fiber strength; ELO, fiber. dPVE, phenotypic variation explained. eAE, additive effect