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Table 5 Mouse cleft lip genes targeted by multiple miRNAs (≥ 2) in the miRNA enrichment analysis (FDR < 0.2)

From: MicroRNA-124-3p suppresses mouse lip mesenchymal cell proliferation through the regulation of genes associated with cleft lip in the mouse

Gene

# miRNA

miRNAs

Zeb1

17

miR-124, miR-340-5p, miR-491, miR-101a-3p, miR-101b-3p, miR-124-3p, miR-141-3p, miR-142a-3p, miR-144-3p, miR-200a-3p, miR-205-5p, miR-23a-3p, miR-23b-3p, miR-374c-5p, miR-686, miR-302c, miR-466 l

Pbx1

16

miR-124, miR-340-5p, miR-141-3p, miR-181a-5p, miR-196a-5p, miR-196b-5p, miR-200a-3p, miR-205-5p, miR-23a-3p, miR-23b-3p, miR-320-3p, miR-425-5p, miR-543-3p, miR-686, miR-466 l, miR-669f

Pbx3

16

miR-340-5p, miR-101a-3p, miR-101b-3p, miR-124-3p, miR-144-3p, miR-181a-5p, miR-196a-5p, miR-196b-5p, miR-320-3p, miR-374c-5p, miR-543-3p, miR-710, miR-142-5p, miR-302c, miR-466 l, miR-669f

Ptch1

16

miR-340-5p, miR-101a-3p, miR-101b-3p, miR-141-3p, miR-144-3p, miR-181a-5p, miR-200a-3p, miR-374c-5p, miR-425-5p, miR-543-3p, miR-686, let-7a-1-3p, let-7b-3p, let-7c-2-3p, let-7f-1-3p, miR-98-3p

Sox11

16

miR-340-5p, miR-491, miR-101a-3p, miR-101b-3p, miR-141-3p, miR-142a-3p, miR-144-3p, miR-181a-5p, miR-196a-5p, miR-196b-5p, miR-200a-3p, miR-23a-3p, miR-23b-3p, miR-673-5p, miR-466 l, miR-669b

Tgfbr1

15

miR-124, miR-340-5p, miR-101a-3p, miR-101b-3p, miR-124-3p, miR-141-3p, miR-142a-3p, miR-144-3p, miR-181a-5p, miR-200a-3p, miR-320-3p, miR-425-5p, miR-686, miR-302c, miR-669f

Cdc42

14

miR-340-5p, miR-491, miR-101a-3p, miR-101b-3p, miR-124-3p, miR-710, miR-142-5p, miR-669b, miR-669f, let-7a-1-3p, let-7b-3p, let-7c-2-3p, let-7f-1-3p, miR-98-3p

Ctnnb1

12

miR-124, miR-142a-3p, miR-200a-3p, miR-320-3p, miR-673-5p, miR-710, miR-142-5p, let-7a-1-3p, let-7b-3p, let-7c-2-3p, let-7f-1-3p, miR-98-3p

Rpgrip1l

12

miR-340-5p, miR-144-3p, miR-196a-5p, miR-196b-5p, miR-23a-3p, miR-23b-3p, miR-425-5p, miR-673-5p, miR-686, miR-710, miR-142-5p, miR-669b

Lrp6

11

miR-124, miR-340-5p, miR-124-3p, miR-205-5p, miR-320-3p, miR-466 l, let-7a-1-3p, let-7b-3p, let-7c-2-3p, let-7f-1-3p, miR-98-3p

Pax9

11

miR-124, miR-491, miR-101a-3p, miR-181a-5p, miR-205-5p, miR-23a-3p, miR-23b-3p, miR-673-5p, miR-142-5p, miR-466 l, miR-669f

Rspo2

11

miR-124, miR-340-5p, miR-101a-3p, miR-101b-3p, miR-144-3p, miR-181a-5p, miR-196a-5p, miR-196b-5p, miR-543-3p, miR-466 l, miR-669f

Bmpr1a

10

miR-124, miR-340-5p, miR-124-3p, miR-142a-3p, miR-320-3p, let-7a-1-3p, let-7b-3p, let-7c-2-3p, let-7f-1-3p, miR-98-3p

Myh10

10

miR-124, miR-340-5p, miR-491, miR-124-3p, miR-141-3p, miR-142a-3p, miR-181a-5p, miR-200a-3p, miR-374c-5p, miR-543-3p

Satb2

10

miR-141-3p, miR-200a-3p, miR-205-5p, miR-23a-3p, miR-23b-3p, miR-320-3p, miR-425-5p, miR-710, miR-466 l, miR-669f

Esrp1

9

miR-124, miR-340-5p, miR-491, miR-124-3p, miR-141-3p, miR-200a-3p, miR-23a-3p, miR-23b-3p, miR-374c-5p

Ednrb

8

miR-124, miR-124-3p, miR-181a-5p, miR-196a-5p, miR-196b-5p, miR-23a-3p, miR-23b-3p, miR-302c

Ptpn11

6

miR-124, miR-124-3p, miR-181a-5p, miR-374c-5p, miR-425-5p, miR-466 l

Ermp1

5

miR-340-5p, miR-491, miR-124-3p, miR-181a-5p, miR-543-3p

Msx1

5

miR-340-5p, miR-101a-3p, miR-101b-3p, miR-144-3p, miR-669f

Sp8

5

miR-124-3p, miR-142a-3p, miR-374c-5p, miR-673-5p, miR-710

Tbx1

4

miR-101a-3p, miR-101b-3p, miR-144-3p, miR-466 l

Gldc

3

miR-124, miR-340-5p, miR-669f

Pbx2

3

miR-340-5p, miR-491, miR-669b

Wnt9b

3

miR-491, miR-302c, miR-466 l

Bmp4

2

miR-340-5p, miR-466 l

Ext1

2

miR-205-5p, miR-669b

Ift88

2

miR-124, miR-124-3p

Mks1

2

miR-340-5p, miR-491

Tfap2a

2

miR-141-3p, miR-200a-3p

Trp63

2

miR-340-5p, miR-142-5p

Wdr19

2

miR-340-5p, miR-491

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BMC Genomics

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