Table 2 Distribution summary of all the differentially expressed genes (DEGs) across nematode resistant clone PA99N82–4 versus nematode susceptible clone Russet Burbank. Three biological replicates of the clones were used at each time point for RNAseq
Libraries compared (3 Replicates each) | Total no. of DEGs | No. of DEGs up-regulated in PA99N82–4 | No. of DEGs up-regulated in PA99N82–4 with Fold change ≥1 | No. of DEGs expressed only in PA99N82–4 |
|---|---|---|---|---|
PA99N82–4_48 hpi versus Russet Burbank_48 hpi | 2973 | 1268 | 831 | 24 |
PA99N82–4_7 dpi versus Russet Burbank_7 dpi | 2826 | 1261 | 894 | 25 |
PA99N82–4_14 dpi versus Russet Burbank_14 dpi | 2166 | 1102 | 687 | 23 |
PA99N82–4_21 dpi versus Russet Burbank_21 dpi | 5282 | 2753 | 1416 | 33 |