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Table 2 Categories of genes associated with 25 general COG functions

From: Genetic boundaries delineate the potential human pathogen Salmonella bongori into discrete lineages: divergence and speciation

CodeValue% of total aDescription
A10.03RNA processing and modification
L1323.85Replication, recombination and repair
B00.00Chromatin structure and dynamics
D310.90Cell cycle control, mitosis and meiosis
Y00.00Nuclear structure
V461.34Defense mechanisms
T1524.43Signal transduction mechanisms
M2156.27Cell wall/membrane biogenesis
N1033.00Cell motility
W00.00Extracellular structures
U1133.29Intracellular trafficking and secretion
O1434.17Posttranslational modification, protein turnover, chaperones
C2366.88Energy production and conversion
G3249.45Carbohydrate transport and metabolism
E3189.27Amino acid transport and metabolism
F812.36Nucleotide transport and metabolism
H1444.20Coenzyme transport and metabolism
I822.39Lipid transport and metabolism
P1825.31Inorganic ion transport and metabolism
Q471.37Secondary metabolites biosynthesis, transport and catabolism
R3339.17General function prediction only
S3169.12Function unknown
105525.60Not in COGs
  1. aThe total is based on the total number of protein coding genes in the annotated genome