Table 3 Accuracy comparison (Alignments)
From: A hybrid and scalable error correction algorithm for indel and substitution errors of long reads
Data | Methodology | #Reads | #Bases | N50 | #Aligned Reads | #Aligned bases | %Aligned reads | %Aligned bases |
|---|---|---|---|---|---|---|---|---|
E. coli | Original | 282394 | 316367409 | 3414 | 223017 | 237497013 | 78.97 | 75.07 |
| Â | LoRDEC | 282394 | 307987923 | 3422 | 247227 | 266373078 | 87.55 | 86.49 |
| Â | Jabba | 149836 | 149322524 | 2517 | 148293 | 141563938 | 98.97 | 94.80 |
| Â | Proovread | 263206 | 284871906 | 1222 | 241948 | 246138387 | 91.92 | 86.40 |
| Â | ParLECH (Indel) | 282394 | 309367145 | 3394 | 264574 | 285070391 | 93.69 | 92.15 |
| Â | ParLECH (Indel+Subst) | 282394 | 309367145 | 3394 | 264720 | 295438268 | 93.74 | 95.50 |
Yeast | Original | 231594 | 1360457697 | 2990 | 190184 | 1206524663 | 82.12 | 88.69 |
| Â | LoRDEC | 231594 | 1345253694 | 2982 | 196669 | 1171490123 | 84.92 | 87.08 |
| Â | Jabba | 152882 | 634947441 | 2173 | 151359 | 634732955 | 99.02 | 99.09 |
| Â | Proovread | 225032 | 1307137185 | 1693 | 211323 | 1100350212 | 93.90 | 84.18 |
| Â | ParLECH (Indel) | 231594 | 1389446261 | 2994 | 199332 | 1240945939 | 86.07 | 89.31 |
| Â | ParLECH (Indel+Subst) | 231594 | 1389446261 | 2994 | 201857 | 1254987596 | 87.16 | 90.32 |
Fruit fly | Original | 6701498 | 29007475325 | 15154 | 3427146 | 13355041639 | 51.14 | 46.04 |
| Â | LoRDEC | 6701498 | 30025673204 | 15154 | 3654326 | 14919815143 | 54.53 | 49.69 |
| Â | Jabba | 4423855 | 10820828565 | 14302 | 3921032 | 9455816742 | 88.63 | 87.38 |
| Â | Proovread | 6511617 | 20174923756 | 8603 | 5450784 | 14497076095 | 83.70 | 71.86 |
| Â | ParLECH (Indel) | 6701498 | 30117416348 | 15154 | 4417627 | 18799138439 | 65.92 | 62.42 |
| Â | ParLECH (Indel+Subst) | 6701498 | 30117416348 | 15154 | 4557627 | 19983756932 | 68.01 | 66.35 |