An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots

BMC Genomics

Table 3 State-of-the-art RNA structure predication algorithms

ID	Method	Website link
1	RnaStructure	http://rna.urmc.rochester.edu/RNAstructureWeb/
2	CyloFold	https://cylofold.ncifcrf.gov/
3	IPknot	http://rtips.dna.bio.keio.ac.jp/ipknot/
4	RNAflod	http://rna.tbi.univie.ac.at/cgi-bin/RNAWebSuite/RNAfold.cgi
5	CombFold	http://www.rnasoft.ca/cgi-bin/RNAsoft/CombFold/combfold.pl
6	HotKnots	http://www.rnasoft.ca/cgi-bin/RNAsoft/HotKnots/hotknots.pl
7	TT2NE	http://eole2.lsce.ipsl.fr/ipht/tt2ne/tt2ne.php

ISSN: 1471-2164