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Table 3 Consistency was measured by mean entropy (ME) and mean normalized entropy (MNE)

From: A novel algorithm for alignment of multiple PPI networks based on simulated annealing

Algorithm

Consistency

D1

D2

D3

D4

D5

D6

D7

D8

Average

isoRankN

ME

1.09

1.07

1.15

1.07

1.18

1.20

1.19

1.20

1.144

 

MNE

0.58

0.56

0.58

0.59

0.53

0.60

0.60

0.58

0.58

NetCoffee

ME

*

*

0.99

0.85

1.05

1.00

1.07

1.17

1.022

 

MNE

*

*

0.54

0.54

0.53

0.55

0.58

0.57

0.55

multiMAGNA++

ME

0.94

0.94

0.91

0.93

0.98

1.00

1.16

1.18

1.005

 

MNE

0.55

0.54

0.53

0.58

0.52

0.57

0.63

0.59

0.56

NetCoffee2

ME

1.04

0.73

0.94

0.87

1.04

1.05

1.01

1.10

0.973

 

MNE

0.54

0.46

0.52

0.54

0.52

0.55

0.56

0.55

0.53

  1. Notably, a matchset is more functionally coherent when ME and MNE are smaller. There is no result of NetCoffee on D1 and D2, because it can not be applied to pairwise network alignment
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BMC Genomics

ISSN: 1471-2164

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