From: Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco
System | Nodes | Mouse - embryonic stem cell (hours) | Human - brain (hours) | ||
---|---|---|---|---|---|
STAR | HISAT2 | STAR | HISAT2 | ||
Standalone | 1 (1 process) | 34.9 | 42.7 | 11.1 | 9.8 |
1 (12 processes) | 20.2 | 14.9 | 5.2 | 3.1 | |
1 (16 processes) | N/A | 14.9 | N/A | 3.0 | |
Falco | 10 | 8.0 | 5.9 | 1.7 | 1.2 |
20 | 4.7 | 3.6 | 1.0 | 0.8 | |
30 | 3.8 | 2.9 | 0.8 | 0.6 | |
40 | 3.5 | 2.6 | 0.7 | 0.6 |