Table 4 Accuracy of assembled transcripts for simulated data from Falco-based runs
From: Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco
Feature | STAR + StringTie (with reference) | STAR + Scallop | HISAT + StringTie | |||
|---|---|---|---|---|---|---|
Sensitivity (%) | Precision (%) | Sensitivity (%) | Precision (%) | Sensitivity (%) | Precision (%) | |
Base | 96.2 | 99.9 | 88.6 | 85.3 | 81.1 | 93.8 |
Exon | 96.4 | 97.9 | 59.6 | 74.7 | 65.8 | 86.0 |
Intron | 95.5 | 99.3 | 74.5 | 99.2 | 87.6 | 97.8 |
Intron Chain | 92.8 | 83.1 | 33.4 | 50.4 | 26.7 | 33.4 |
Transcript | 93.3 | 84.9 | 35.2 | 33.4 | 29.3 | 38.0 |
Locus | 98.1 | 99.3 | 72.5 | 59.7 | 69.7 | 82.4 |