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Table 5 Precision of assembled transcripts for human brain single cell dataset across different transcript assembly approaches

From: Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco

FeatureSTAR + StringTie (with reference)STAR + ScallopHISAT + StringTie
 Falco alignment + individual assembly (%)Falco alignment + pooled assembly (%)Falco transcript assembly mode (%)Falco alignment + individual assembly (%)Falco alignment + pooled assembly (%)Falco transcript assembly mode (%)Falco alignment + individual assembly (%)Falco alignment + pooled assembly (%)Falco transcript assembly mode (%)
Base42.763.041.848.927.928.940.660.138.9
Exon76.592.379.079.473.173.472.990.276.0
Intron88.096.992.388.791.791.182.994.688.2
Intron Chain79.194.585.980.184.483.372.190.779.6
Transcript57.583.060.262.151.051.654.880.957.8
Locus32.261.532.437.224.124.930.558.931.2