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Table 1 Intergroup comparisons of differentially expressed genes in the skin of tick-resistant and -susceptible Braford cattle

From: Network analysis uncovers putative genes affecting resistance to tick infestation in Braford cattle skin

Gene SymbolEnsembl Gene IDDescriptionlog2 FCaFDRb
ALOX12EENSBTAG00000031933Bos taurus arachidonate lipoxygenase, epidermal, mRNA. [Source:RefSeq mRNA;Acc:NM_001083532]3.177.10E-071
3.581.41E-082
ANXA8ENSBTAG00000018499Bos taurus annexin A8-like 1 (ANXA8L1), mRNA.
[Source:RefSeq mRNA;Acc:NM_174241]
1.285.14E-041
1.342.16E-042
ASIPENSBTAG00000034077Bos taurus agouti signaling protein, mRNA. [Source:RefSeq mRNA;Acc:NM_206843]4.563.74E-081
4.746.12E-092
AWAT1ENSBTAG00000018839Bos taurus acyl-CoA wax alcohol acyltransferase 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001192683]−9.601.37E-051
−9.352.73E-052
BOLAENSBTAG00000022590uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MWX3]−2.061.17E-031
2.203.93E-042
CCSENSBTAG00000004343Bos taurus copper chaperone for superoxide dismutase, mRNA. [Source:RefSeq mRNA;Acc:NM_001046187]1.092.29E-021
1.185.96E-032
COL11A1ENSBTAG00000021217Bos taurus collagen, type XI, alpha 1, mRNA.
[Source:RefSeq mRNA;Acc:NM_001166509]
−2.042.41E-021
−2.002.26E-022
CPVLENSBTAG00000007146carboxypeptidase, vitellogenic-like
[Source:HGNC Symbol;Acc:14399]
−3.532.23E-101
−3.287.47E-092
CYP2B6ENSBTAG00000003871cytochrome P450, family 2, subfamily B, polypeptide 6
[Source:HGNC Symbol;Acc:2615]
−6.491.23E-151
−6.613.02E-162
DGCR6LENSBTAG00000047299Bos taurus DiGeorge syndrome critical region gene 6 (DGCR6), mRNA. [Source:RefSeq mRNA;Acc:NM_001110446]0.962.12E-021
1.009.24E-032
DHRS4ENSBTAG00000017665Bos taurus dehydrogenase/reductase (SDR family) member 4, mRNA. [Source:RefSeq mRNA;Acc:NM_174822]2.039.35E-141
2.115.04E-152
DPYSL4ENSBTAG00000017780Bos taurus dihydropyrimidinase-like 4, mRNA.
[Source:RefSeq mRNA;Acc:NM_001163783]
6.141.73E-021
ENPP3ENSBTAG00000020196Bos taurus ectonucleotide pyrophosphatase/phosphodiesterase 3, mRNA. [Source:RefSeq mRNA;Acc:NM_001075923]2.653.29E-051
2.692.39E-052
FAM174AENSBTAG00000045909Bos taurus family with sequence similarity 174, member A, mRNA. [Source:RefSeq mRNA;Acc:NM_001206184]1.293.09E-021
1.473.50E-032
FAM229BENSBTAG00000033429Bos taurus protein FAM229B, mRNA.
[Source:RefSeq mRNA;Acc:NM_001195067]
−2.673.34E-041
−2.702.29E-042
FNBP1LENSBTAG00000004383formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]−0.811.73E-021
−0.782.87E-022
FOSENSBTAG00000004322Bos taurus FBJ murine osteosarcoma viral oncogene homolog, mRNA. [Source:RefSeq mRNA;Acc:NM_182786]3.326.34E-031
3.309.79E-032
FUT5ENSBTAG00000000414Bos taurus fucosyltransferase 5 (alpha (1,3) fucosyltransferase), mRNA. [Source:RefSeq mRNA;Acc:NM_176851]2.431.10E-021
2.691.79E-032
GAL3ST1ENSBTAG00000014232Bos taurus galactose-3-O-sulfotransferase 1, mRNA.
[Source:RefSeq mRNA;Acc:NM_001101972]
1.931.60E-022
GSTM1ENSBTAG00000031788Bos taurus glutathione S-transferase mu 1, mRNA.
[Source:RefSeq mRNA;Acc:NM_001083772]
2.353.29E-051
2.451.28E-052
HBG2ENSBTAG00000037644Bos taurus hemoglobin, gamma 2 (LOC788610), mRNA. [Source:RefSeq mRNA;Acc:NM_001110509]−4.641.99E-031
− 4.062.51E-022
IMP3ENSBTAG00000012199Bos taurus IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast), mRNA. [Source:RefSeq mRNA;Acc:NM_001079588]1.503.34E-091
1.399.66E-082
KIF23ENSBTAG00000009983Bos taurus kinesin family member 23, mRNA.
[Source:RefSeq mRNA;Acc:NM_001098038]
−1.511.10E-021
−1.392.72E-022
LAMA1ENSBTAG00000018160laminin, alpha 1 [Source:HGNC Symbol;Acc:6481]2.594.34E-031
3.189.21E-052
LOC781726ENSBTAG00000038366LOC781726 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A8YXZ3]7.319.21E-061
7.162.39E-052
MGC140681ENSBTAG00000011692Bos taurus chromosome 25 open reading frame, human C16orf45 (C25H16orf45), mRNA. [Source:RefSeq mRNA;Acc:NM_001078077]3.712.13E-041
3.292.39E-032
MOSC2ENSBTAG00000016277Bos taurus MOCO sulphurase C-terminal domain containing 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001076380]−1.533.13E-031
−1.523.23E-032
MSRB3ENSBTAG00000044017methionine sulfoxide reductase B3 [Source:HGNC Symbol;Acc:27375]1.331.79E-031
1.312.14E-032
MTHFSENSBTAG00000020023Bos taurus 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase), mRNA.
[Source:RefSeq mRNA;Acc:NM_001075616]
−1.171.41E-021
MYADMLENSBTAG00000002786Bos taurus myeloid-associated differentiation marker-like (LOC781494), mRNA. [Source:RefSeq mRNA;Acc:NM_001101279]−2.401.46E-022
ENSBTAG00000034302Bos taurus myeloid-associated differentiation marker-like (LOC512150), mRNA. [Source:RefSeq mRNA;Acc:NM_001104975]6.331.67E-032
ENSBTAG00000040580Bos taurus myeloid-associated differentiation marker-like (LOC618633), mRNA. [Source:RefSeq mRNA;Acc:NM_001103302]−5.883.24E-022
NDUFC2ENSBTAG00000018188Bos taurus NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5 kDa, mRNA. [Source:RefSeq mRNA;Acc:NM_176642]1.147.06E-031
1.137.84E-032
NENFENSBTAG00000000759Bos taurus neudesin neurotrophic factor, mRNA.
[Source:RefSeq mRNA;Acc:NM_001076419]
1.121.13E-021
1.062.32E-022
PON3ENSBTAG00000034645Bos taurus paraoxonase 3, mRNA.
[Source:RefSeq mRNA;Acc:NM_001075479]
−4.501.95E-171
−4.434.40E-172
PRODHENSBTAG00000047676Bos taurus proline dehydrogenase (oxidase) 1, mRNA.
[Source:RefSeq mRNA;Acc:NM_001075185]
1.512.56E-021
1.522.21E-022
RBP1ENSBTAG00000020028Bos taurus retinol binding protein 1, cellular, mRNA.
[Source:RefSeq mRNA;Acc:NM_001025343]
1.292.54E-022
RESP18ENSBTAG00000010897Bos taurus regulated endocrine-specific protein 18 homolog (rat), mRNA. [Source:RefSeq mRNA;Acc:NM_001077897]6.707.27E-051
6.575.44E-042
SAA3ENSBTAG00000022396Bos taurus serum amyloid A 3, mRNA.
[Source:RefSeq mRNA;Acc:NM_181016]
5.053.24E-021
5.551.28E-022
SAOENSBTAG00000001041Bos taurus amine oxidase, copper containing 3, mRNA.
[Source:RefSeq mRNA;Acc:NM_001130764]
6.464.22E-031
5.761.68E-022
SIRT5ENSBTAG00000014904Bos taurus sirtuin 5, mRNA.
[Source:RefSeq mRNA;Acc:NM_001034295]
1.141.18E-031
1.168.01E-042
SLC6A16ENSBTAG00000030543solute carrier family 6, member 16 [Source:HGNC Symbol;Acc:13622]4.506.55E-031
4.603.83E-032
SYT5ENSBTAG00000002522Bos taurus synaptotagmin V, mRNA.
[Source:RefSeq mRNA;Acc:NM_001083744]
1.854.83E-031
1.672.26E-022
TACR2ENSBTAG00000021664Bos taurus tachykinin receptor 2, mRNA.
[Source:RefSeq mRNA;Acc:NM_174469]
2.348.25E-031
2.395.10E-032
TET1ENSBTAG00000037756tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:29484]−2.164.12E-022
TNMDENSBTAG00000021059Bos taurus tenomodulin, mRNA.
[Source:RefSeq mRNA;Acc:NM_001099948]
−3.933.08E-021
−4.081.68E-022
TNNT3ENSBTAG00000022158Bos taurus troponin T type 3 (skeletal, fast), mRNA.
[Source:RefSeq mRNA;Acc:NM_001001441]
−3.771.68E-022
TTC36ENSBTAG00000014899Bos taurus tetratricopeptide repeat domain 36, mRNA.
[Source:RefSeq mRNA;Acc:NM_001040515]
−2.941.07E-021
−2.702.72E-022
UPK3AENSBTAG00000009913Bos taurus uroplakin 3A, mRNA.
[Source:RefSeq mRNA;Acc:NM_174709]
3.112.26E-022
UTS2RENSBTAG00000018170urotensin 2 receptor [Source:HGNC Symbol;Acc:4468]3.295.99E-031
WNT7AENSBTAG00000001668Bos taurus wingless-type MMTV integration site family, member 7A, mRNA. [Source:RefSeq mRNA;Acc:NM_001192788]7.103.67E-021
7.591.58E-022
  1. alog2 Fold Change
  2. bFalse Discovery Rate
  3. 1Resistant vs. Susceptible prior to infestation: Rpre vs. Spre
  4. 2Resistant vs. Susceptible post infestation: Rpost vs. Spost