Table 2 The output and quality control of the RNA-Seq data
Maximum | Minimum | Average | |
|---|---|---|---|
Clean data (bp) | 12,724,976,400 | 6,852,831,900 | 8,916,922,600 |
HQ clean data (bp) | 12,214,001,205 | 6,606,166,213 | 8,595,871,647 |
Q30 (%) | 96.69% | 95.05% | 96.00% |
GC (%) | 57.26% | 55.72% | 56.52% |
Clean reads No. | 84,833,176 | 45,685,546 | 594,461,501 |
HQ clean reads No. | 82,982,428 | 44,857,256 | 58,375,413 |
% HQ clean reads | 98.47% | 97.82% | 98.21% |
Mapped reads No. | 65,017,939 | 32,881,766 | 45,563,696 |
Mapping ratio | 82.76% | 50.46% | 80.33% |
Total genes | 25,204 | ||