Table 1 Summary of single-nucleotide polymorphisms in lotus accessions
From: Comparative population genomics reveals genetic divergence and selection in lotus, Nelumbo nucifera
Groups | n. | Total | Private | θπ (10− 3) | Region | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
UTR3 | UTR5 | UTR5;UTR3 | Intergenic | Intronic | CDS | ||||||||||||
Nonsynonymous | Stopgain | Stoploss | Synonymous | Unknown | Ratio of Nonsyn/Syn | Total | genes | ||||||||||
Flower lotus | 11 | 8,991,192 | 206,476 | 3.52 | 42,381 | 36,468 | 21 | 6,880,906 | 1,881,376 | 84,878 | 1939 | 287 | 60,138 | 2798 | 1.41 | 150,040 | 21,102 |
Seed lotus | 21 | 8,161,881 | 469,267 | 2.46 | 34,590 | 29,459 | 23 | 6,321,473 | 1,650,468 | 71,889 | 1781 | 283 | 49,470 | 2445 | 1.45 | 125,868 | 21,197 |
Rhizome lotus | 13 | 6,590,716 | 87,758 | 1.92 | 28,419 | 24,193 | 20 | 5,094,179 | 1,342,102 | 57,535 | 1313 | 237 | 40,641 | 2077 | 1.42 | 101,803 | 19,796 |
Wild sacred lotus | 22 | 8,046,985 | 756,575 | 1.87 | 34,975 | 30,055 | 23 | 6,219,232 | 1,634,652 | 73,500 | 1783 | 277 | 50,018 | 2470 | 1.47 | 128,048 | 21,437 |
American lotus | 2 | 18,504,122 | 13,957,952 | – | 118,767 | 103,748 | 170 | 13,611,092 | 4,289,740 | 211,456 | 4174 | 573 | 158,475 | 5927 | 1.33 | 380,605 | 23,839 |
Total | 69 | 25,475,287 | – | 4.24 | 146,879 | 127,592 | 190 | 19,103,583 | 5,614,715 | 211,641 | 6042 | 745 | 196,050 | 7850 | 1.39 | 482,328 | 24,180 |