Table 1 The CAZymes families represented in the Entodinium caudatum transcriptome
From: The transcriptome of the rumen ciliate Entodinium caudatum reveals some of its metabolic features
| Family | NO. transcripts | SPa | Notea |
|---|---|---|---|
| AA6 | 1 | 1 | |
| CBM6 | 1 | ||
| CBM13 | 9 | ||
| CBM18 | 1 | ||
| CBM20 | 20 | ||
| CBM32 | 2 | ||
| CBM35 | 1 | ||
| CBM45 | 4 | ||
| CBM50‡ | 3 | 1 | |
| CBM57 | 2 | 2 | |
| CBM63 | 1 | 1 | |
| CBM67 | 1 | ||
| CE1 | 21 | ||
| CE2 | 1 | ||
| CE3 | 1 | ||
| CE4 | 3 | acetyl xylan esterase, deacetylase (chitin, chitooligosaccharide, peptidoglycan GlcNAc, peptidoglycan MurNAc) | |
| CE7 | 10 | ||
| CE10† | 23 | 7 | |
| CE14 | 1 | ||
| GH2 | 6 | ||
| GH3 | 20 | 7 | |
| GH5 | 2 | 2 | |
| GH9 | 1 | ||
| GH13 | 33 | 14 | |
| GH16 | 4 | 2 | |
| GH18 | 8 | 6 | chitinase, lysozyme |
| GH24 | 4 | 1 | lysozyme |
| GH25 | 20 | 12 | lysozyme |
| GH27 | 1 | ||
| GH28 | 1 | ||
| GH30 | 1 | 1 | |
| GH31 | 12 | 3 | |
| GH33 | 1 | 1 | |
| GH38 | 2 | 1 | |
| GH43 | 2 | 2 | |
| GH53 | 1 | ||
| GH55 | 1 | ||
| GH74 | 1 | 1 | |
| GH76 | 2 | 1 | |
| GH77 | 1 | 1 | |
| GH78 | 2 | ||
| GH84 | 6 | 6 | N-acetyl β-glucosaminidase |
| GH87 | 4 | ||
| GH89 | 1 | α-N-acetylglucosaminidase | |
| GH93 | 6 | ||
| GH105 | 1 | 1 | |
| GH125 | 3 | ||
| GT1 | 1 | ||
| GT2 | 38 | ||
| GT4 | 10 | ||
| GT5 | 2 | UDP-Glc:glycogen glucosyltransferase, ADP-Glc:starch glucosyltransferase, NDP-Glc:starch glucosyltransferase, UDP-Glc:α-1,3-glucan synthase, UDP-Glc:α-1,4-glucan synthase | |
| GT8 | 14 | ||
| GT10 | 1 | ||
| GT17 | 5 | ||
| GT20 | 3 | ||
| GT23 | 2 | ||
| GT28 | 1 | ||
| GT33 | 1 | ||
| GT35 | 1 | glycogen or starch phosphorylase | |
| GT41 | 1 | ||
| GT50 | 1 | ||
| GT69 | 2 | ||
| GT75 | 1 | ||
| GT83 | 1 | ||
| GT92 | 7 | ||
| PL8 | 1 | ||
| PL9 | 1 | lyase (thiopeptidoglycan, pectate, exopolygalacturonate) |