Fig. 2
From: PaCBAM: fast and scalable processing of whole exome and targeted sequencing data
Comparison of PaCBAM results with other tools. a Comparison of PaCBAM and GATK depth of coverage (left) with zoom in the coverage range [0,500] (right); number of positions considered in the analysis and correlation results are reported. b Comparison of allelic fraction of ~ 40 K positions annotated as SNPs in dbSNP database v144 and having an allelic fraction > 0.2 in both PaCBAM and GATK pileup output. c Single-base coverage obtained by running either Picard MarkDuplicates + PaCBAM pileup or PaCBAM pileup with duplicates filtering option active (left) with zoom in the coverage range [0,500] (right). d Regional mean depth of coverage obtained by running either Picard MarkDuplicates + PaCBAM pileup or PaCBAM pileup with duplicates filtering option active