Table 1 Statistics of reads generated by transcriptome sequencing of longan SE
Sample Name | Total Clean reads | Total Reads Map to Genome | Genome Mapping Rate (%) | Total Reads Map to Gene | Gene Mapping Rate (%) | Expressed Transcripts | Expressed Exon | Novel Transcripts | Extend Gene | Alternative Splicing |
|---|---|---|---|---|---|---|---|---|---|---|
NEC | 59,785,854 | 48,798,229 | 81.62 | 34,380,246 | 57.51 | 22,743 | 110,864 | 1935 | 10,281 | 35,084 |
EC | 64,876,258 | 52,623,741 | 81.11 | 35,386,494 | 54.54 | 19,745 | 103,200 | 1710 | 9092 | 19,056 |
ICpEC | 59,580,846 | 48,346,067 | 81.14 | 30,535,088 | 51.25 | 21,144 | 107,592 | 1816 | 9197 | 36,446 |
GE | 59,540,168 | 48,871,200 | 82.08 | 29,214,788 | 49.07 | 21,102 | 107,971 | 1732 | 9638 | 39,768 |