Fig. 6
Differential expression analysis of transcripts between mock-inoculated ATL07 and ATLWT plants. a Volcano plot showing the differentially expressed genes (in blue) with at least a 2-fold change between mock-inoculated ATLWT and ATL07 plants. b The correlation heatmap diagram of the top 50 most differentially expressed (DE) genes between the mock-inoculated ATLWT and ATL07 plants, revealing genes with expression correlated to the presence of potato4E:pvr12. Each column represents a single technical replicate. Biological repetitions for each treatment are labelled from R1 to R3. A hierarchical cluster of genes with similar expression patterns is shown to the left. Expression levels are colored from dark blue to red to represent high and low levels, respectively. Gene annotations and locus names are shown to the right