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Table 1 Sequence coverage at variable nucleotide positions between eIF4E sequences in the ATL07 and ATLWT plants. Sequence coverages of the eIF4E pvr12 mutations (T209A, G245T, A334G) are represented in bold. Raw depth corresponds to the total nucleotide count at each position. A1 represents the most frequent nucleotide observed at that position and A2 the second most abundant. The relative abundance of each nucleotide is shown in parentheses

From: Overexpression of a modified eIF4E regulates potato virus Y resistance at the transcriptional level in potato

Position ATL07 ATLWT
Raw Depth A1 Depth (%) A2 Depth (%) Raw Depth A1 Depth (%) A2 Depth (%)
68 978 C 976 (99.8) G 1 (0.1) 130 C 107 (82.3) G 22 (16.9)
78 987 A 973 (98.6) G 13 (1.3) 168 A 128 (76.2) G 40 (23.8)
131 2233 C 2207 (98.8) T 20 (0.9) 602 C 454 (75.4) T 146 (24.3)
144 1530 A 1503 (98.2) G 27 (1.8) 521 G 270 (51.8) A 251 (48.2)
165 182 A 163 (89.6) G 18 (9.9) 301 G 300 (99.7)  
209 1538 A 1464 (95.2) T 71 (4.6) 611 T 611 (100)  
245 2924 G 2847 (97.4) T 72 (2.5) 590 T 587 (99.5)  
279 3009 T 2946 (97.9) G 60 (2.0) 646 G 394 (61.0) T 250 (38.7)
334 2240 A 2144 (95.7) G 90 (4.0) 702 G 695 (99.0)  
413 7614 A 7359 (96.6) G 245 (3.2) 1487 G 1469 (98.8)  
419 7464 T 7357 (98.6) C 98 (1.3) 1436 T 886 (61.7) C 550 (38.3)
462 494 A 466 (94.3) T 27 (5.5) 427 T 372 (87.1) A 54 (12.6)
480 2302 C 2250 (97.7) T 48 (2.1) 797 T 566 (71.0) C 231 (29.0)
486 7114 C 6972 (98.0) T 137 (1.9) 1489 T 1252 (84.1) C 233 (15.6)
523 8630 T 8559 (99.2) G 59 (0.7) 1376 T 1035 (75.2) G 338 (24.6)
616 316 T 294 (93.0) C 21 (6.6) 370 C 220 (59.5) T 149 (40.3)
618 316 C 281 (88.9) T 35 (11.1) 381 T 359 (94.2)  
645 1210 C 1172 (96.9) T 37 (3.1) 351 T 286 (81.5) C 64 (18.2)
648 1440 T 1386 (96.2) C 51 (3.5) 337 C 331 (98.2)  
690 3415 C 3398 (99.5) A 17 (0.5) 64 A 61 (95.3)