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Table 2 Frequencies of different SSR repeat motif types observed in P. giganteum transcriptome

From: SMRT sequencing of a full-length transcriptome reveals transcript variants involved in C18 unsaturated fatty acid biosynthesis and metabolism pathways at chilling temperature in Pennisetum giganteum

SSR motif

Repeat number

Percentage

5

6

7

8

9

10

> 10

Tatal

(%)

Dinucleotide

0

4596

1813

1216

710

387

859

9581

24.37

Trinucleotide

18,897

6009

2135

819

274

89

121

28,344

72.11

Tetranucleotide

649

134

85

26

9

2

13

918

2.34

Pentanucleotide

170

28

18

6

2

2

19

245

0.62

Hexanucleotide

127

54

17

4

2

2

15

221

0.56

Total

19,843

10,821

4068

2071

997

482

1027

39,309

100.00

Percentage (%)

50.48

27.53

10.35

5.27

2.54

1.23

2.61

100.00

 
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BMC Genomics

ISSN: 1471-2164

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