Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid

Table 3 Hormone-regulated PR genes^a

	Number of hormone-regulated DEGs
PR Gene Family	SA	JA	SA/JA co-regulated^b	SA/JA reciprocally regulated	Number of hormone-responsive DEGs per PR family
1	0	1	2	0	3
2	1	4	10	1	16
3	2	3	0	0	5
4	0	2	0	0	2
5	1	4	5	0	10
6	1	0	1	0	2
7	2	8	14	0	24
8	0	0	1	0	1
9	1	7	8	1	17
10	1	4	2	0	7
11	0	2	1	0	3
14	0	0	2	0	2
15/16	1	6	1	0	8
17	0	1	2	0	3
Number of hormone-responsive DEGs across PR families	10	42	49	2	103

^aFor identities of hormone-regulated PR genes, see Additional file 8
^bSA and JA co-regulated genes are defined as genes whose RNAs are either up- or down-regulated by both hormones

ISSN: 1471-2164