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Table 2 Number of genes in the core, soft-core, shell, and cloud genomes of X. fastidiosa subsp. fastidiosa and X. fastidiosa subsp. pauca isolates included in this study, and subsp. fastidiosa and subsp. pauca isolates originating from Costa Rica. The values reported by Vanhove et al. [9] and Vanhove et al. [8] are also included

From: Impacts of local population history and ecology on the evolution of a globally dispersed pathogen

Subspecies

Core

Soft-core

Shell

Cloud

This study

X. fastidiosa subsp. pauca (N = 101)

514

1189

860

6360

X. fastidiosa subsp. fastidiosa (N = 167)

1506

248

875

5246

This study, Costa Rica (N = 15)

1416

0

2090

1289

X. fastidiosa subsp. pauca (N = 3)

2089

78

107

X. fastidiosa subsp. fastidiosa (N = 12)

1643

211

688

1094

Vanhoveet al.2019

X. fastidiosa subsp. pauca (N = 20)

1516

143

2096

1123

X. fastidiosa subsp. fastidiosa (N = 25)

1282

460

867

790

Vanhoveet al.2020

X. fastidiosa subsp. fastidiosa (N = 120)

1073

816

756

1938