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Table 2 Classified repeat sequences in the three Cladosiphon okamuranus strain genome

From: Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus

Percentage in the assembly      
Genome size  S-strain
135Mb
K-strain
135Mb
O-strain
130Mbp
C-strain
143Mbp
Class of transposons      
DNA transposons
  hAT-Charlie0.013%a0.013%0.012%0.013%
  TcMar-Tigger0.000%0.000%0.000%0.000%
 Total 0.547%0.405%0.515%0.551%
Retrotransposons
LTR
  ERVL0.000%0.000%0.000%0.000%
  ERVL-MaLRs0.000%0.000%0.000%0.000%
  ERV_classI0.007%0.007%0.006%0.007%
  ERV_classII0.004%0.005%0.004%0.004%
 Total 2.082%1.466%2.263%2.841%
LINE
  LINE10.006%0.006%0.006%0.006%
  LINE20.002%0.002%0.002%0.002%
  L3/CR10.018%0.013%0.032%0.030%
 Total 0.749%0.554%0.656%0.795%
SINE  0.009%0.009%0.008%0.008%
Low complexity  0.214%0.210%0.209%0.182%
Simple repeats  2.719%2.480%2.442%2.200%
Satellite  0.030%0.027%0.029%0.023%
Unclassified  5.547%4.719%5.416%5.633%
  1. aPercentage in assembled genomes