Table 2 Classified repeat sequences in the three Cladosiphon okamuranus strain genome
From: Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus
Percentage in the assembly | Â | Â | Â | Â | Â | Â |
|---|---|---|---|---|---|---|
Genome size | Â | Â | S-strain 135Mb | K-strain 135Mb | O-strain 130Mbp | C-strain 143Mbp |
Class of transposons | Â | Â | Â | Â | Â | Â |
DNA transposons | ||||||
| Â | Â | hAT-Charlie | 0.013%a | 0.013% | 0.012% | 0.013% |
| Â | Â | TcMar-Tigger | 0.000% | 0.000% | 0.000% | 0.000% |
| Â | Total | Â | 0.547% | 0.405% | 0.515% | 0.551% |
Retrotransposons | ||||||
LTR | ||||||
| Â | Â | ERVL | 0.000% | 0.000% | 0.000% | 0.000% |
| Â | Â | ERVL-MaLRs | 0.000% | 0.000% | 0.000% | 0.000% |
| Â | Â | ERV_classI | 0.007% | 0.007% | 0.006% | 0.007% |
| Â | Â | ERV_classII | 0.004% | 0.005% | 0.004% | 0.004% |
| Â | Total | Â | 2.082% | 1.466% | 2.263% | 2.841% |
LINE | ||||||
| Â | Â | LINE1 | 0.006% | 0.006% | 0.006% | 0.006% |
| Â | Â | LINE2 | 0.002% | 0.002% | 0.002% | 0.002% |
| Â | Â | L3/CR1 | 0.018% | 0.013% | 0.032% | 0.030% |
| Â | Total | Â | 0.749% | 0.554% | 0.656% | 0.795% |
SINE | Â | Â | 0.009% | 0.009% | 0.008% | 0.008% |
Low complexity | Â | Â | 0.214% | 0.210% | 0.209% | 0.182% |
Simple repeats | Â | Â | 2.719% | 2.480% | 2.442% | 2.200% |
Satellite | Â | Â | 0.030% | 0.027% | 0.029% | 0.023% |
Unclassified | Â | Â | 5.547% | 4.719% | 5.416% | 5.633% |