Table 3 Summary of polymorphisms between SunUp and Sunset
From: Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset
Chrom. | Total size(bp) | No.of SNPs | No.of InDels | SNP per 1 kb | In/Del per 1 kb |
|---|---|---|---|---|---|
CHROM_1 | 22,976,894 | 16,246 | 2214 | 0.71 | 0.10 |
CHROM_2 | 28,675,255 | 6842 | 1893 | 0.24 | 0.07 |
CHROM_3 | 29,397,938 | 18,294 | 2630 | 0.62 | 0.09 |
CHROM_4 | 27,056,416 | 12,813 | 2426 | 0.47 | 0.09 |
CHROM_5 | 24,352,217 | 13,952 | 2150 | 0.57 | 0.09 |
CHROM_6 | 30,516,430 | 50,463 | 3821 | 1.65 | 0.13 |
CHROM_7 | 22,375,162 | 17,294 | 2361 | 0.77 | 0.11 |
CHROM_8 | 21,952,264 | 12,610 | 2001 | 0.57 | 0.09 |
CHROM_9 | 27,303,179 | 12,021 | 1986 | 0.44 | 0.07 |
Unanchored scaffolds | 135,176,073 | 149,829 | 12,589 | 1.11 | 0.09 |
Genome-wide | 369,781,828 | 310,364 | 34,071 | 0.84 | 0.09 |