Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implications

Kim, Goon-Bo; Lim, Chae Eun; Kim, Jin-Seok; Kim, Kyeonghee; Lee, Jeong Hoon; Yu, Hee-Ju; Mun, Jeong-Hwan

doi:10.1186/s12864-020-06812-7

Table 1 Samples and assembly statistics of the Artemisia plastomes

From: Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implications

Subgenus	Section	Scientific name	Nucleotide length (bp)				Number of genes			Reference or Voucher^a	Genbank Accession
Subgenus	Section	Scientific name	Total	LSC	SSC	IR	Protein	tRNA	rRNA		Genbank Accession
Artemisia	Abrotanum	A. annua	150,952	82,772	18,268	24,956	87	37	8	Zhang et al. 2017 (direct submission)	KY085890
		A. annua	150,955	82,776	18,267	24,956	87	37	8	Shen et al. 2017 [33]	MF623173
		A. annua	150,955	82,776	18,267	24,956	87	37	8	NIBRVP0000595661	MG951482
		A. apiacea	151,091	82,830	18,343	24,959	87	37	8	NIBRVP0000538751	MG951483
		A. freyniana f. discolor	151,275	82,965	18,344	24,983	87	37	8	NIBRVP0000538858	MG951487
		A. fukudo	151,011	82,751	18,348	24,956	87	37	8	Lee et al. 2016a [34]	KU360270
		A. fukudo	151,022	82,762	18,348	24,956	87	37	8	NIBRVP0000597993	MG951488
		A. gmelinii	151,247	82,988	18,341	24,959	87	37	8	NIBRVP0000592776	MG951489
		A. gmelinii	151,318	83,061	18,339	24,959	87	37	8	Lee et al. 2016b [35]	NC031399
	Absinthium	A. frigida	151,103	82,790	18,415	24,949	87	37	8	SRR8208356^b	n.a.
		A. frigida	151,076	82,740	18,396	24,970	87	37	8	Liu et al. 2013 [36]	NC020607
		A. nakaii	151,020	82,760	18,348	24,956	87	37	8	NIBRVP0000598807	MG951494
		A. sieversiana	150,910	82,710	18,304	24,948	87	37	8	NIBRVP0000592824	MG951499
	Artemisia	A. argyi	151,176	82,915	18,347	24,957	87	37	8	NIBRVP0000592833	MG951484
		A. argyi	151,192	82,930	18,348	24,957	87	37	8	Kang et al. 2016 [37]	NC030785
		A. argyrophylla	151,189	82,927	18,348	24,957	87	37	8	Kim et al. 2017 (direct submission)	MF034022
		A. feddei	151,112	82,878	18,322	24,956	87	37	8	NIBRVP0000592740	MG951486
		A. keiskeana	150,858	82,622	18,344	24,946	87	37	8	NIBRVP0000592791	MG951492
		A. montana	151,150	82,891	18,345	24,957	87	37	8	NIBRVP0000627850	MG951493
		A. montana	151,130	82,873	18,343	24,957	87	37	8	Choi and Park, 2014 (direct submission)	NC025910
		A. princeps	151,193	82,932	18,347	24,957	87	37	8	NIBRVP0000592810	MG951495
		A. rubripes	151,133	82,874	18,345	24,957	87	37	8	NIBRVP0000592774	MG951496
		A. selengensis	151,255	82,942	18,389	24,962	87	37	8	NIBRVP0000538775	MG951497
		A. selengensis	151,261	82,948	18,389	24,962	87	37	8	NIBRVP0000595650	MG951498
		A. selengensis	151,215	82,920	18,371	24,962	87	37	8	Meng et al. 2019 [38]	MH042532
		A. stolonifera	151,144	82,878	18,350	24,958	87	37	8	NIBRVP0000592785	MG951500
Dracunculus	Dracunculus	A. capillaris	151,020	82,790	18,306	24,962	87	37	8	Kim et al. 2017 (direct submission)	KY073391
		A. capillaris	151,020	82,790	18,306	24,962	87	37	8	NIBRVP0000592735	MG951485
		A. capillaris	151,056	82,821	18,313	24,961	87	37	8	Lee et al. 2016b [35]	NC031400
		A. dracunculs	151,042	82,811	18,317	24,957	87	37	8	SRR8208350^c	n.a.
	Latilobus	A. hallaisanensis	151,015	82,823	18,290	24,951	87	37	8	NIBRVP0000538771	MG951490
	Latilobus	A. japonica	151,080	82,844	18,314	24,961	87	37	8	NIBRVP0000592828	MG951491

^aVouchers were deposited at the National Institute of Biological Resources (Incheon, Korea)
^{b, c}Raw sequence reads were downloaded from NCBI SRA database [39] and de novo assembled in this study

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ISSN: 1471-2164

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