Table 2 Summary of AS in BSB- and TC- homoeologs from full-length transcriptome data
AS types | TC-homoeologs in TBF3 | BSB-homoeologs in TBF3 | TC-homoeologs in BTF3 | BSB-homoeologs in BTF3 | ||||
|---|---|---|---|---|---|---|---|---|
NO. of events (%) | NO. of gene | NO. of events (%) | NO. of gene | NO. of events (%) | NO. of gene | NO. of events (%) | NO. of gene | |
Alternative 3′ splice Site | 1430 (6.63%) | 988 | 2026 (6.75%) | 1439 | 1714 (5.61%) | 1177 | 1877 (6.19%) | 1374 |
Alternative 5′ splice Site | 1603 (7.43%) | 1140 | 2384 (7.94%) | 1625 | 1912 (6.26%) | 1271 | 2122 (7.00%) | 1533 |
Alternative site | 2520 (11.68%) | 1409 | 3300 (11.00%) | 1640 | 4001 (13.09%) | 1912 | 3538 (11.67%) | 1899 |
Exon skipping | 3869 (17.93%) | 2137 | 6086 (20.28%) | 3379 | 3685 (12.06%) | 2050 | 5101 (16.83%) | 3005 |
Retained Introns | 4091 (18.96%) | 823 | 5140 (17.13%) | 1842 | 8096 (26.49%) | 3107 | 8092 (26.70%) | 3181 |
Other | 8064 (37.37%) | 2001 | 11,071 (36.89%) | 2745 | 11,153 (36.49%) | 2491 | 9575 (31.60%) | 2861 |
Total | 21,577 | 5286 | 30,007 | 7029 | 30,561 | 6481 | 30,305 | 7271 |