Comparative population genomic analysis uncovers novel genomic footprints and genes associated with small body size in Chinese pony

Asadollahpour Nanaei, Hojjat; Esmailizadeh, Ali; Ayatollahi Mehrgardi, Ahmad; Han, Jianlin; Wu, Dong-Dong; Li, Yan; Zhang, Ya-Ping

doi:10.1186/s12864-020-06887-2

Table 1 Candidate genes putatively selected by three statistical methods (F_ST, log₂ θπ ratio and XP-CLR) affecting body size traits in DBP

From: Comparative population genomic analysis uncovers novel genomic footprints and genes associated with small body size in Chinese pony

Method	Gene	Chr.^a	Ensembl ID	Summary of gene function
F_ST (top 1%)	NELL1	7	ENSECAG00000024835	Cell differentiation and cell proliferation [14, 15], Short stature [16]
	FGFR1	27	ENSECAG00000015006	Bone growth and skeletal development [17,18,19,20]
	SNTG1	9	ENSECAG00000000087	Body measurement traits [21]
	BMP2	22	ENSECAG00000021201	Bone physiology and metabolism [22,23,24,25].
	TBX15	5	ENSECAG00000023325	Skeletal muscle and muscle metabolism [26]
log2(θπ·DBP/θπ·THB) (top 1%)	NELL1	7	ENSECAG00000024835	Cell differentiation and cell proliferation [14, 15], Short stature [16]
	FGFR1	27	ENSECAG00000015006	Bone growth and skeletal development [17,18,19,20]
	TRHDE	28	ENSECAG00000009284	Growth Traits [27]
	CAPN7	16	ENSECAG00000004932	Growth Traits [28]
	GALNT10	14	ENSECAG00000006979	Body mass index [29]
	PDE1B	6	ENSECAG00000022552	Muscle growth [30]
	ARPP21	16	ENSECAG00000022872	Body size traits [31]
	FAM210A	8	ENSECAG00000007436	Bone and muscle structure [32]
	CNN3	5	ENSECAG00000020188	Skeletal muscle development [33]
	SWT1	5	ENSECAG00000012085	Carcass weight [34]
	PRDM16	2	ENSECAG00000017045	Body weight [34]
XP-CLR (top 1%)	NELL1	7	ENSECAG00000024835	Cell differentiation and cell proliferation [14, 15], Short stature [16]
	SNTG1	9	ENSECAG00000000087	Body measurement traits [21]
	BMP2	22	ENSECAG00000021201	Bone physiology and metabolism [22,23,24,25].
	TRHDE	28	ENSECAG00000009284	Growth Traits [28]
	IGF2BP2	19	ENSECAG00000020685	Embryonic development [35]
	PRKG2	3	ENSECAG00000024387	Dwarfism [36]
	ADAMTS17	1	ENSECAG00000000579	Human height [37], Development of body size in horses [37]
	SH2B2	13	ENSECAG00000024201	Growth performance [38]
	PLXDC2	29	ENSECAG00000017520	Body size traits [39]
	TNS3	4	ENSECAG00000020052	Bone length [39]
	AGTPBP1	23	ENSECAG00000019812	Body mass index [40]

^aChromosome

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ISSN: 1471-2164

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