Table 2 Summary statistics for GWAS for female reproduction traits based on GBLUP and BayesCπ methods
From: Genetic architecture and genomic selection of female reproduction traits in rainbow trout
Trait | Peak SNP | GBLUP | BayesCπ | |||||
|---|---|---|---|---|---|---|---|---|
Omy | Identifier | Position (bp) | -log(P-value) | Confidence interval (Mb) | LogBF | Credibility interval (Mb) | Vara (%) | |
SD | 6 | Affx-88,920,061 | 38,611,684 | 11.5 | 38.61–38.61 | 18.4 | 38.61–38.61 | 7.2 |
SD | 11 | Affx-88,936,987 | 44,670,771 | 7.4 | 43.17–45.32 | 1.9 | ||
SD | 15 | Affx-88,942,247 | 5,640,348 | 6.8 | 4.86–5.64 | 1.2 | ||
SD | 27 | Affx-88,907,414 | 8,854,196 | 6.1 | 7.04–8.95 | 1.7 | ||
SW | 1 | Affx-88,918,810 | 79,053,674 | 9.4 | 77.68–79.05 | 1.3 | ||
SW | 2 | Affx-88,951,720 | 5,801,797 | 6.3 | 5.80–6.18 | 9.2 | 5.80–6.18 | 2.9 |
SW | 2 | Affx-88,927,743 | 17,660,020 | 6.1 | 16.29–17.66 | 8.4 | 16.29–17.66 | 1.9 |
SW | 12 | Affx-88,950,456 | 5,349,425 | 6.9 | 4.56–6.22 | 9.2 | 4.56–6.80 | 2.5 |
EN | 2 | Affx-88,951,720 | 5,801,797 | 6.5 | 5.80–6.18 | 9.6 | 5.80–6.18 | 3.2 |
EN | 8 | Affx-88,953,704 | 50,018,409 | 5.9 | 49.64–50.02 | 8.6 | 49.64–50.02 | 1.4 |
EN | 12 | Affx-88,950,456 | 5,349,425 | 6.2 | 4.23–6.80 | 8.0 | 4.56–6.80 | 2.7 |
EW | 1 | Affx-88,932,157 | 48,339,143 | 5.4 | 48.34–48.60 | |||
EW | 1 | Affx-88,950,822 | 64,632,546 | 7.0 | 60.50–64.63 | 6.3 | 61.59–64.63 | 1.2 |
EW | 1 | Affx-88,915,911 | 67,153,692 | 7.2 | 66.61–68.88 | |||
EW | 1 | Affx-88,957,820 | 68,664,516 | 6.4 | 66.54–68.88 | 2.0 | ||
ED | 1 | Affx-88,941,218 | 68,345,854 | 6.0 | 68.35–68.66 | |||
ED | 1 | Affx-88,942,198 | 71,813,379 | 7.1 | 70.85–71.81 | 8.5 | 70.85–71.81 | 1.9 |
ED | 2 | Affx-88,930,958 | 17,234,307 | 6.6 | 16.14–18.25 | 1.5 | ||
ED | 8 | Affx-88,908,356 | 47,852,976 | 6.4 | 47.84–49.70 | 1.6 | ||
ED | 12 | Affx-88,930,328 | 68,199,037 | 7.5 | 67.33–68.79 | 1.1 | ||