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Table 2 Summary statistics for GWAS for female reproduction traits based on GBLUP and BayesCπ methods

From: Genetic architecture and genomic selection of female reproduction traits in rainbow trout

Trait Peak SNP GBLUP BayesCπ
Omy Identifier Position (bp) -log(P-value) Confidence interval (Mb) LogBF Credibility interval (Mb) Vara (%)
SD 6 Affx-88,920,061 38,611,684 11.5 38.61–38.61 18.4 38.61–38.61 7.2
SD 11 Affx-88,936,987 44,670,771    7.4 43.17–45.32 1.9
SD 15 Affx-88,942,247 5,640,348    6.8 4.86–5.64 1.2
SD 27 Affx-88,907,414 8,854,196    6.1 7.04–8.95 1.7
SW 1 Affx-88,918,810 79,053,674    9.4 77.68–79.05 1.3
SW 2 Affx-88,951,720 5,801,797 6.3 5.80–6.18 9.2 5.80–6.18 2.9
SW 2 Affx-88,927,743 17,660,020 6.1 16.29–17.66 8.4 16.29–17.66 1.9
SW 12 Affx-88,950,456 5,349,425 6.9 4.56–6.22 9.2 4.56–6.80 2.5
EN 2 Affx-88,951,720 5,801,797 6.5 5.80–6.18 9.6 5.80–6.18 3.2
EN 8 Affx-88,953,704 50,018,409 5.9 49.64–50.02 8.6 49.64–50.02 1.4
EN 12 Affx-88,950,456 5,349,425 6.2 4.23–6.80 8.0 4.56–6.80 2.7
EW 1 Affx-88,932,157 48,339,143 5.4 48.34–48.60    
EW 1 Affx-88,950,822 64,632,546 7.0 60.50–64.63 6.3 61.59–64.63 1.2
EW 1 Affx-88,915,911 67,153,692 7.2 66.61–68.88    
EW 1 Affx-88,957,820 68,664,516    6.4 66.54–68.88 2.0
ED 1 Affx-88,941,218 68,345,854 6.0 68.35–68.66    
ED 1 Affx-88,942,198 71,813,379 7.1 70.85–71.81 8.5 70.85–71.81 1.9
ED 2 Affx-88,930,958 17,234,307    6.6 16.14–18.25 1.5
ED 8 Affx-88,908,356 47,852,976    6.4 47.84–49.70 1.6
ED 12 Affx-88,930,328 68,199,037    7.5 67.33–68.79 1.1
  1. aVar: % of genetic variance explained by all the SNPs included in the QTL credibility interval
  2. SD Spawning date; SW Spawn weight; EN Egg number; EW Egg average weight; ED Egg average diameter