Skip to main content

Table 2 Features of the putative Reb-coding region of Vibrio coralliilyticus strain RE22

From: Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae

V. coralliilyticus RE22 coding sequence accessiona

Amino Acid Length

Phylogenetic Logistic Regression p-value

Putative function

Domain Hitb

Domain Accession

AXN33720.1

296

5.73E-04

Muraidase

Muraidase

pfam11860

AXN33721.1

261

5.02E-04

SAM-dependent methyltransferase

Methyltransf 23

pfam13489

AXN33722.1

518

5.02E-04

Cystine-binding periplasmic protein

Periplasmic Binding Protein Type 2

cl21456

AXN33723.1

207

5.02E-04

HisM

HisM

cl34036

AXN33724.1

692

5.02E-04

MCP protein

PDC2 MCP like

cd12912

AXN33725.1

258

5.02E-04

Intermediate filament tail domain protein

Lamin Tail Domains

pfam00932

AXN33726.1

320

5.02E-04

hypothetical protein

ND

ND

AXN33727.1

140

5.02E-04

hypothetical protein

ND

ND

AXN33728.1

99

5.02E-04

hypothetical protein

ND

ND

AXN33729.1

261

5.02E-04

hypothetical protein

ND

ND

AXN33730.1

235

5.02E-04

hypothetical protein

ND

ND

AXN33731.1

283

5.02E-04

hypothetical protein

ND

ND

AXN33732.1

197

5.02E-04

hypothetical protein

ND

ND

AXN33733.1

304

0.9998

short chain dehydrogenase

sepiapterin reductase

TIGR01500

AXN33734.1

658

0.99998

hypothetical protein

ND

ND

AXN33735.1

632

1

phospholipase

PLDc SF

cl15239

AXN33736.1

420

1

Tat pathway signal protein

ND

ND

AXN34531.1

184

1

hypothetical protein

ND

ND

AXN33737.1

297

ND

hypothetical protein

ND

ND

AXN33738.1

297

ND

hypothetical protein

ND

ND

AXN33739.1

1187

ND

hypothetical protein

ND

ND

AXN33740.1

88

5.02E-04

hypothetical protein

ND

ND

AXN33741.1

63

5.02E-04

Reb-like protein

Reb

cl13232

AXN33742.1

90

5.02E-04

Reb

Reb

pfam11747

AXN33743.1

87

5.02E-04

hypothetical protein

conj TIGR03752

cl26990

AXN33744.1

142

5.02E-04

Reb-like protein

Reb

cl13232

AXN33745.1

97

3.45E-03

hypothetical protein

ND

ND

AXN33746.1

87

5.02E-04

Reb

Reb

pfam11747

AXN33747.1

86

5.02E-04

Reb

Reb

pfam11747

AXN33748.1

88

5.02E-04

Reb

Reb

pfam11747

AXN33749.1

66

5.02E-04

Reb-like protein

Reb

cl13232

AXN33750.1

403

5.02E-04

AraC transcriptional reg.

AtoC

cl34427

  1. ND No domain hits were found for that sequence.
  2. Bold values indicate significant phylogenetic logistic regression results (p < 0.005).
  3. a Accession number GCA_003391375.1
  4. b Top domain identified using the Conserved Domain Database