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Table 2 Features of the putative Reb-coding region of Vibrio coralliilyticus strain RE22

From: Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae

V. coralliilyticus RE22 coding sequence accessiona Amino Acid Length Phylogenetic Logistic Regression p-value Putative function Domain Hitb Domain Accession
AXN33720.1 296 5.73E-04 Muraidase Muraidase pfam11860
AXN33721.1 261 5.02E-04 SAM-dependent methyltransferase Methyltransf 23 pfam13489
AXN33722.1 518 5.02E-04 Cystine-binding periplasmic protein Periplasmic Binding Protein Type 2 cl21456
AXN33723.1 207 5.02E-04 HisM HisM cl34036
AXN33724.1 692 5.02E-04 MCP protein PDC2 MCP like cd12912
AXN33725.1 258 5.02E-04 Intermediate filament tail domain protein Lamin Tail Domains pfam00932
AXN33726.1 320 5.02E-04 hypothetical protein ND ND
AXN33727.1 140 5.02E-04 hypothetical protein ND ND
AXN33728.1 99 5.02E-04 hypothetical protein ND ND
AXN33729.1 261 5.02E-04 hypothetical protein ND ND
AXN33730.1 235 5.02E-04 hypothetical protein ND ND
AXN33731.1 283 5.02E-04 hypothetical protein ND ND
AXN33732.1 197 5.02E-04 hypothetical protein ND ND
AXN33733.1 304 0.9998 short chain dehydrogenase sepiapterin reductase TIGR01500
AXN33734.1 658 0.99998 hypothetical protein ND ND
AXN33735.1 632 1 phospholipase PLDc SF cl15239
AXN33736.1 420 1 Tat pathway signal protein ND ND
AXN34531.1 184 1 hypothetical protein ND ND
AXN33737.1 297 ND hypothetical protein ND ND
AXN33738.1 297 ND hypothetical protein ND ND
AXN33739.1 1187 ND hypothetical protein ND ND
AXN33740.1 88 5.02E-04 hypothetical protein ND ND
AXN33741.1 63 5.02E-04 Reb-like protein Reb cl13232
AXN33742.1 90 5.02E-04 Reb Reb pfam11747
AXN33743.1 87 5.02E-04 hypothetical protein conj TIGR03752 cl26990
AXN33744.1 142 5.02E-04 Reb-like protein Reb cl13232
AXN33745.1 97 3.45E-03 hypothetical protein ND ND
AXN33746.1 87 5.02E-04 Reb Reb pfam11747
AXN33747.1 86 5.02E-04 Reb Reb pfam11747
AXN33748.1 88 5.02E-04 Reb Reb pfam11747
AXN33749.1 66 5.02E-04 Reb-like protein Reb cl13232
AXN33750.1 403 5.02E-04 AraC transcriptional reg. AtoC cl34427
  1. ND No domain hits were found for that sequence.
  2. Bold values indicate significant phylogenetic logistic regression results (p < 0.005).
  3. a Accession number GCA_003391375.1
  4. b Top domain identified using the Conserved Domain Database