Table 4 Polymorphisms between rye inbred lines in ScGAMYB sequence detected in nucleotide (nt) sequence, expected amino acid (aa) sequence and predicted protein second-structure (2D)
changed nt position | type of nt change* | line with change | changed aa position | type of aa change | line with change | change in 2D |
|---|---|---|---|---|---|---|
Lines: DS2, L35, M12, RXL10 | ||||||
99 | C → T | DS2 | 33 | – | – | – |
129 | G → A | DS2 | 43 | – | – | – |
204 | C → G | DS2 | 68 | – | – | – |
226, 227 | AA→TT | M12 | 76 | N → F | M12 | + |
259–261 | ATC → GCG | M12 | 87 | I → A | M12 | + |
265 | T → C | M12 | 89 | Y → H | M12 | + |
271 | C → A | M12 | 91 | – | – | – |
277 | G → A | M12 | 93 | D → N | M12 | – |
564 | C → T | DS2 | 188 | – | – | – |
Lines: 541, Ot1–3, DS2, L35, M12, RXL10 | ||||||
681 | C↔T | L35, M12, RXL10 | 227 | – | – | – |
698 | A↔C | L35, M12, RXL10 | 233 | Q↔P | L35, M12, RXL10 | + |
720 | A↔G | L35, M12, RXL10 | 240 | – | – | – |
735 | G↔A | L35, M12, RXL10 | 245 | – | – | – |
741 | C↔T | L35, M12, RXL10 | 247 | – | – | – |
944 | G↔A | L35, M12, RXL10 | 315 | S↔N | L35, M12, RXL10 | – |
1100 | C → G | 541, DS2 | 367 | S → C | 541, DS2 | + |
1110 | G → C | 541, DS2 | 370 | – | – | + |
1185 | C → T | 541, DS2 | 395 | – | – | – |
1190, 1191 | GG → GA/AG | 541/DS2 | 397 | R → K | DS2 | + |
1375 | T → C | 541,Ot1–3 | 459 | S → P | 541, Ot1–3 | – |