From: GMIEC: a shiny application for the identification of gene-targeted drugs for precision medicine
Name resource | Type application | Uploading custom data | Input file | GUI interface | Reference |
---|---|---|---|---|---|
GMIEC | Web-based/ shiny application | yes | Gene-expression, copy number, methylation, table with genes mutated, drugs-genes file, clinical data, gene-list, bed file. | yes | – |
DriverDBv3 | Web-based | no | The web interface incorporates somatic mutations, RNA-seq, miRNA-expression, methylation, copy number, clinical data. | yes | [12] |
OncoKB | Web-based | no | Users can query the database gene, alteration, drug | yes | [13] |
PanDrugs | Web-based | yes | VCF, RNK, gene-lists, drug query | yes | [8] |
PreMedKB | Web-based | no | Users can query the resource for variant, disease, drug, gene or combinations of these category. | yes | [6] |
Cancer Variant Explorer | R-package | yes | Clinical, mutation | no | [14] |
IndividPath | R-package | yes | Gene-expression | no | [15] |
iPAS | R-package | yes | Gene-expression | no | [16] |
PharmacoGx | R-package | no | Pharmacogenomic datasets | no | [17] |
Prodigy | R-package | yes | Protein-protein interaction network, gene-expression, mutations | no | [18] |