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Table 2 LMM-based significant associations between five alleles of AMR genes in SGI1

From: GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

  1. Allele_Y and Allele_X denote the response allele and explanatory allele in an LMM Y∼X, respectively. An association is denoted by a filled circle in the column LMM when it is significant, otherwise, an unfilled circle is drawn. Directionality is shown in this table for comparing the value of \(\hat {\lambda }\), which denotes an REML estimate of parameter λ for evaluating structural random effects in an LMM. sd: score of APDs. pIBD: an estimate of the probability that APDs used for calculating the sd are in IBD
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BMC Genomics

ISSN: 1471-2164

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