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Table 1 Ptr isolate sequence, assembly and annotation statistics

From: PacBio genome sequencing reveals new insights into the genomic organisation of the multi-copy ToxB gene of the wheat fungal pathogen Pyrenophora tritici-repentis

  M4a DW5
Isolate information
 Race 1 5
 Effectors AC B
 Collection site Western Australia North Dakota
 Collection year 2009 1998
Sequencing
 Sequencing Platform PacBio RSII PacBio Sequel
 Number of reads 594,877 1,306,274
 Total sequence (Mbp) 3500 14,225
 Sequencing coverage 75 355.62
Error correction
 Number of reads 56,338 302,147
 Error corrected sequence (Mbp) 758 3085
 Genome coverage 19 77.13
Assembly statistics
 NCBI accession NQIK00000000 MUXC00000000
 Number of contigs 50 60
 Number of scaffolds* 41* NA
 Total length contigs/scaffolds* (Mb) 40.92* 40.87
 N50 (Mb) 3.65 3.13
 L50 4 5
 Mean size (kb) 998 681
 GC % 50.73 50.21
 Repeat % 7.96 8.33
Gene predictions M4b  
 Gene number 15,443 14,276
 Total CDS (Mb) 20.7 17.9
 Average size (kb) 1.3 1.2
Predicted effectors
 Number of predicted effectors 445 401
 Total length (aa) 61,737 60,150
 Mean gene size (aa) 138 150
 Median gene size (aa) 117 123
  1. a Genome was sourced from previous optically mapped assembly [12]. b M4 genome annotation this study. * scaffolds