| |
M4a
|
DW5
|
|---|
|
Isolate information
|
|
Race
|
1
|
5
|
|
Effectors
|
AC
|
B
|
|
Collection site
|
Western Australia
|
North Dakota
|
|
Collection year
|
2009
|
1998
|
|
Sequencing
|
|
Sequencing Platform
|
PacBio RSII
|
PacBio Sequel
|
|
Number of reads
|
594,877
|
1,306,274
|
|
Total sequence (Mbp)
|
3500
|
14,225
|
|
Sequencing coverage
|
75
|
355.62
|
|
Error correction
|
|
Number of reads
|
56,338
|
302,147
|
|
Error corrected sequence (Mbp)
|
758
|
3085
|
|
Genome coverage
|
19
|
77.13
|
|
Assembly statistics
|
|
NCBI accession
|
NQIK00000000
|
MUXC00000000
|
|
Number of contigs
|
50
|
60
|
|
Number of scaffolds*
|
41*
|
NA
|
|
Total length contigs/scaffolds* (Mb)
|
40.92*
|
40.87
|
|
N50 (Mb)
|
3.65
|
3.13
|
|
L50
|
4
|
5
|
|
Mean size (kb)
|
998
|
681
|
|
GC %
|
50.73
|
50.21
|
|
Repeat %
|
7.96
|
8.33
|
|
Gene predictions
|
M4b
| |
|
Gene number
|
15,443
|
14,276
|
|
Total CDS (Mb)
|
20.7
|
17.9
|
|
Average size (kb)
|
1.3
|
1.2
|
|
Predicted effectors
|
|
Number of predicted effectors
|
445
|
401
|
|
Total length (aa)
|
61,737
|
60,150
|
|
Mean gene size (aa)
|
138
|
150
|
|
Median gene size (aa)
|
117
|
123
|
- a Genome was sourced from previous optically mapped assembly [12]. b M4 genome annotation this study. * scaffolds
