Table 2 Gene annotation and reported QTLs for the shared genomic regions between runs of homozygosity (ROH) hotspots and the putative sweep regions retrieved from the within-population and cross-populations DCMS statistics
BTA1 | Start | End | Genes | QTL2 |
|---|---|---|---|---|
Within-population DCMS statistic x ROH | ||||
 1 | 8,300,000 | 8,350,000 | – | Somatic cell score [27] |
 1 | 41,600,000 | 41,650,000 | EPHA6, ARL6 | Maturity rate [28] |
 1 | 112,250,000 | 112,300,000 | KCNAB1 | – |
 8 | 15,800,000 | 15,850,000 | – | Tick resistance [29] |
 15 | 35,365,655 | 35,399,999 | OTOG | – |
 15 | 35,400,001 | 35,450,000 | – | – |
 18 | 34,718,675 | 34,750,000 | CDH16, RRAD | – |
 21 | 6,550,000 | 6,600,000 | ADAMTS17 | Calving ease [30] |
 21 | 63,250,000 | 63,300,000 | VRK1 | Interval to first estrus after calving [31] |
Cross-population DCMS statistic x ROH | ||||
 3 | 77,250,000 | 77,300,000 | – | Body condition score [23] |
 5 | 31,800,000 | 31,850,000 | – | |
 5 | 38,761,637 | 38,761,745 | YAF2 |  |
 7 | 57,050,000 | 57,100,000 | – | Rump angle [33] |
 11 | 67,450,000 | 67,500,000 | ANTXR1, GFPT1 | |
 11 | 67,700,000 | 67,749,999 | – | – |
 11 | 67,750,001 | 67,800,000 | NFU1 | – |
 11 | 68,550,000 | 68,600,000 | PCYOX1 | – |
 14 | 52,900,000 | 52,914,848 | – | Maturity rate [28] |
 15 | 10,150,000 | 10,200,000 | – | – |
 15 | 10,900,000 | 10,950,000 | – | Calving ease (maternal) [35], Daughter pregnancy rate [35], Foot angle [35], Milk fat percentage [35], Milk fat yield [35], Net merit [35], Length of productive life [35], Milk protein percentage [35], Milk protein yield [35], Calving ease [35], Somatic cell score [35] |
 20 | 38,000,000 | 38,050,000 | RANBP3L, NADK2 | Milk protein percentage [36], Milk protein yield [37], Milk yield [37], Coat texture [38] |
 21 | 200,000 | 250,000 | – | – |
 25 | 1,345,564 | 1,350,000 | NME3, MRPS34 | Milk fat yield [39] |