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Table 1 Genes with high module membership to Modules R4 and R7 that are differentially expressed in resistant-aged fruit compared to the uninoculated control and inoculated susceptible fruit. Mod. Mem. – Module membership; LFC – log2(Fold Change); Padj – Benjamini-Hochberg adjusted p-value; R – resistant 16 dpp; S – susceptible 8 dpp; RI – Resistant inoculated; RC – Resistant control

From: Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit

Module

Gene

Description

(from Arabidopsis best BLAST hit)

Mod.

Mem.

LFC

R vs. S

Padj

R vs. S

LFC

RI vs. RC

Padj

RI vs. RC

LFC

R vs. S

Padj

R vs. S

LFC

RI vs. RC

Padj

RI vs. RC

    

2 hpi

4 hpi

R4

Csa3G706170

Transmembrane protein

0.96

1.39

2.9e-3

1.06

3.9e-1

1.14

2.4e-2

1.22

4.9e-2

Csa2G351540

Chaperone protein dnaJ-related

0.94

1.36

3.3e-2

2.15

1.3e-2

0.49

5.2e-1

2.54

3.6e-4

Csa3G845500

Respiratory burst oxidase homologue D

0.94

1.10

6.1e-3

1.21

5.0e-2

−0.01

9.9e-1

0.57

3.8e-1

Csa3G782680

Syntaxin of plants 121

0.92

1.51

7.8e-5

1.38

1.2e-2

0.83

5.8e-2

0.78

1.8e-1

Csa4G009900

Inositol polyphosphate kinase 2 beta

0.92

1.83

2.3e-4

1.93

6.5e-3

0.66

2.6e-1

2.29

4.1e-5

Csa5G524780

NAD(P)-binding Rossmann-fold superfamily protein

0.91

1.24

4.3e-2

2.20

6.6e-3

0.77

2.6e-1

1.92

7.9e-3

Csa4G640960

HXXXD-type acyl-transferase family protein

0.91

1.50

2.8e-2

2.58

3.7e-3

−0.31

7.3e-1

2.33

2.1e-3

Csa3G271380

Regulator of Vps4 activity in the MVB pathway protein

0.90

1.75

7.2e-3

2.20

1.9e-2

−0.27

7.7e-1

1.78

3.5e-2

Csa1G025960

WRKY DNA-binding protein 33

0.90

1.17

5.8e-3

1.54

6.6e-3

−0.05

9.4e-1

1.11

3.8e-2

Csa2G069200

Cinnamate-4-hydroxylase

0.89

1.63

3.2e-2

2.73

6.6e-3

−0.57

5.5e-1

1.39

1.9e-1

Csa5G471600

PHO1 homologue 3

0.89

1.48

8.0e-4

1.94

7.1e-4

−0.09

9.0e-1

0.92

1.5e-1

Csa1G439830

Gibberellin 2-oxidase

0.89

1.61

5.7e-4

1.77

1.1e-2

1.38

7.4e-3

1.69

6.0e-3

Csa1G086390

Receptor-like kinase in in flowers 3

0.88

1.34

2.4e-3

1.48

2.7e-2

−0.58

2.6e-1

1.47

1.4e-2

Csa4G411390

Glycosyltransferase family 61 protein

0.88

1.58

8.9e-3

2.05

2.1e-2

−0.19

8.3e-1

1.47

7.0e-2

Csa3G219720

Protein kinase superfamily protein

0.87

1.01

1.2e-3

1.25

6.6e-3

0.35

3.7e-1

0.68

1.6e-1

Csa4G049610

1-aminocyclopropane-1-carboxylic acid (acc) synthase 6

0.84

1.73

2.0e-2

2.35

2.4e-2

0.59

5.2e-1

2.45

3.5e-3

Csa6G367150

ACT domain repeat 4

0.81

1.43

6.3e-3

0.74

1.0e+0

1.33

1.3e-2

1.74

6.1e-3

R7

Csa6G495000

Root hair specific 19

0.95

1.68

3.9e-3

0.41

1.0e+0

1.43

2.3e-2

1.98

4.0e-3

Csa6G213910

Peroxidase 52

0.94

2.14

3.6e-4

0.32

1.0e+0

1.88

3.6e-3

1.97

7.7e-3

Csa3G567330

WRKY DNA-binding protein 75

0.93

1.74

4.3e-3

2.53

5.7e-3

−0.34

6.7e-1

2.73

2.8e-4

Csa7G432140

HOPW1–1-interacting 1

0.93

1.02

5.4e-3

−0.05

1.0e+0

1.31

2.6e-4

1.04

1.7e-2

Csa6G403620

Unknown protein

0.91

1.25

2.8e-2

0.46

1.0e+0

1.15

4.8e-2

1.72

1.1e-2

Csa2G070840

Calcium-dependent phospholipid-binding Copine family protein

0.90

1.20

7.7e-3

1.48

2.4e-2

0.17

7.9e-1

1.14

5.3e-2

Csa2G349630

Sulfur E2

0.90

3.93

4.2e-10

1.29

4.2e-1

1.28

3.2e-2

3.24

8.4e-8

Csa6G454420

Unknown protein

0.87

1.23

3.0e-2

0.30

1.0e+0

1.34

1.3e-2

1.36

4.4e-2

Csa4G285730

Peroxidase 2

0.87

2.32

3.7e-4

0.16

1.0e+0

1.70

2.1e-2

1.97

2.1e-2

Csa6G517010

Alternative NAD(P)H dehydrogenase 2

0.87

1.63

3.2e-2

3.00

3.5e-2

0.19

8.5e-1

2.82

3.4e-3

Csa5G152820

Beta-hydroxylase 1

0.86

1.71

2.1e-2

1.56

5.2e-1

1.67

3.2e-2

2.24

1.7e-2

Csa6G501260

Gamma-glutamyl transpeptidase 1

0.86

1.38

2.1e-2

0.12

1.0e+0

1.18

4.5e-2

1.49

3.9e-2

Csa6G160180

1-aminocyclopropane-1-carboxylate oxidase

0.85

0.74

1.1e-1

1.04

2.7e-1

1.78

2.3e-5

1.55

1.4e-3

Csa6G431740

ABC-2 type transporter family protein

0.83

1.44

1.9e-2

0.14

1.0e+0

2.06

4.3e-4

1.81

8.6e-3

Csa4G646190

Putative lysine decarboxylase family protein

0.82

1.13

6.0e-3

0.32

1.0e+0

1.09

8.7e-3

1.65

2.3e-4

Csa2G270790

SBP (S-ribonuclease binding protein) family protein

0.79

2.32

1.0e-2

1.51

8.1e-1

1.65

2.6e-2

4.45

3.2e-4

Csa7G390060

Phenazine biosynthesis PhzC/PhzF protein

0.77

0.62

3.2e-1

0.05

1.0e+0

1.31

1.1e-2

1.30

4.3e-2

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