CpG name in HM450K array | PyroAssay name | Illumina infinium human methylation 450BEAD chip array | Pyrosequencing technical validation | ||||||
---|---|---|---|---|---|---|---|---|---|
beta_mean_CEU | beta_mean_CHB | CEU.beta_mean -CHB.beta_mean | q- value | CEU.mean | CHB.mean | CEU.mean -CHB.mean | p-value_beta | ||
(n = 18) | (n = 18) | (n = 10) | (n = 10) | ||||||
cg24861686 | 1_CpG1a | 0.841 | 0.697 | 0.143 | 0.0000 | 0.813 | 0.591 | 0.222 | 0.0000 |
cg03140118 | 2_CpG1a | 0.176 | 0.503 | −0.327 | 0.0010 | 0.131 | 0.518 | −0.387 | 0.0003 |
3_CpG1 | – | – | – | – | 0.410 | 0.150 | 0.259 | 0.0056 | |
3_CpG2 | – | – | – | – | 0.289 | 0.087 | 0.202 | 0.0048 | |
cg00862290 | 3_CpG3a | 0.466 | 0.161 | 0.305 | 0.0080 | – | – | – | – |
cg07904028 | 4_CpG1a | 0.515 | 0.714 | −0.199 | 0.0145 | – | – | – | – |
cg08979191 | 5_CpG1a | 0.779 | 0.520 | 0.258 | 0.0185 | 0.782 | 0.544 | 0.238 | 0.0117 |
5_CpG2 | – | – | – | – | 0.609 | 0.400 | 0.209 | 0.1174 | |
5_CpG3 | – | – | – | – | 0.599 | 0.418 | 0.181 | 0.1942 | |
6_CpG1 | – | – | – | – | 0.067 | 0.186 | −0.119 | 0.0106 | |
cg04036182 | 6_CpG2a | 0.271 | 0.486 | −0.215 | 0.0201 | 0.112 | 0.470 | −0.358 | 0.0000 |
cg26367031 | 7_CpG1a | 0.539 | 0.170 | 0.369 | 0.0215 | – | – | – | – |
cg18136963 | 8_CpG1 | – | – | – | – | 0.520 | 0.179 | 0.341 | 0.0019 |
8_CpG2a | 0.514 | 0.162 | 0.352 | 0.0355 | 0.498 | 0.174 | 0.324 | 0.0097 | |
8_CpG3 | – | – | – | – | 0.423 | 0.179 | 0.243 | 0.0180 | |
cg07207043 | 9_CpG1a | 0.625 | 0.820 | −0.195 | 0.0345 | 0.529 | 0.813 | −0.283 | 0.0023 |
9_CpG2 | – | – | – | – | 0.422 | 0.726 | −0.304 | 0.0007 | |
9_CpG3 | – | – | – | – | 0.480 | 0.814 | −0.335 | 0.0004 | |
10_CpG1 | – | – | – | – | 0.258 | 0.531 | −0.272 | 0.0000 | |
cg23669876 | 10_CpG2a | 0.368 | 0.728 | −0.360 | 0.290 | 0.590 | −0.299 | 0.0000 |