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Table 1 Characterization of candidate gene effector genes specifically localized in the esophageal glands of Pratylenchus penetrans. The list is sorted in agreement to their respective fragment per kilobase of transcript per million mapped reads (FPKM) values presented in Additional file 1: Table S1

From: A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

Transcript code Interpro Acession InterPro Name Pfam Protein (aa) Domain position Domain bit score E-value % Cysteine content % Glycine content % Proline content
Ppen13114_c0_seq2 87 0.1 16.1 29.9
Ppen8917_c0_seq1 147 0 4.1 10.6
Ppen11800_c0_seq1 86 1.2 10.5 2.3
Ppen9432_c0_seq1 155 3.9 4.5 18.7
Ppen11421_c0_seq1 509 0.2 5.5 4.7
Ppen13553_c0_seq1 116 0.9 23 5.2
Ppen17089_c0_seq1 233 2.6 3.9 2.1
Ppen8388_c0_seq1 94 1.1 19.1 38.3
Ppen12616_c0_seq1 76 11.8 9.2 2.6
Ppen15969_c0_seq2 438 0.7 6.8 3
Ppen13037_c0_seq1 127 0 5.5 4.7
Ppen20090_c0_seq1 128 0 21.1 10.2
Ppen8150_c0_seq1 270 0 9.3 6.3
Ppen11603_c0_seq1 632 0.2 10.1 4.7
Ppen3597_c0_seq1 IPR000668 Papain family cysteine protease PF00112 375 116–370 153.4 8.60E-45 3.5 9.3 3.2
Ppen16202_c0_seq1 533 0 19.3 22.1
Ppen18231_c0_seq1 388 2.3 6.2 5.4
Ppen10194_c0_seq1 806 0.05 5.5 2.9
Ppen19584_c0_seq1 113 0 23.9 15.9
Ppen14923_c0_seq1 IPR006377 Domain of unknwon function DUF148 PF02520.14 262 48–149 50 2.50E-13 0.1 16.8 5.3
Ppen13972_c0_seq1 141 1.4 7.1 2.8
Ppen16480_c0_seq1 727 0.06 3.2 10.5
Ppen28021_c0_seq1 121 2.5 11.6 16.5
Ppen15256_c0_seq1 IPR010480 Pepsin inhibitor-3-like repeated domain PF06394.10 248 25–99 | 120–193 58.6 | 78.7 4.6E-16 | 2.5E-22 0.2 6.9 5.2
Ppen16504_c0_seq1 IPR001506 Astacin (Peptidase family M12A) PF01400.21 564 189–383 156.8 4.20E-46 3 7.4 4.8
Ppen11417_c0_seq1 145 4.8 3.4 1.4
Ppen10830_c0_seq1 173 6.4 5.2 9.8
Ppen18503_c0_seq1 128 1.6 10.9 14.1
Ppen11174_c0_seq2 112 0.9 17.9 3.6
Ppen15571_c0_seq2 405 0.01 5.7 3.2