Table 1 Characterization of candidate gene effector genes specifically localized in the esophageal glands of Pratylenchus penetrans. The list is sorted in agreement to their respective fragment per kilobase of transcript per million mapped reads (FPKM) values presented in Additional file 1: Table S1
Transcript code | Interpro Acession | InterPro Name | Pfam | Protein (aa) | Domain position | Domain bit score | E-value | % Cysteine content | % Glycine content | % Proline content |
|---|---|---|---|---|---|---|---|---|---|---|
Ppen13114_c0_seq2 | – | – | – | 87 | – | – | – | 0.1 | 16.1 | 29.9 |
Ppen8917_c0_seq1 | – | – | – | 147 | – | – | – | 0 | 4.1 | 10.6 |
Ppen11800_c0_seq1 | – | – | – | 86 | – | – | – | 1.2 | 10.5 | 2.3 |
Ppen9432_c0_seq1 | – | – | – | 155 | – | – | – | 3.9 | 4.5 | 18.7 |
Ppen11421_c0_seq1 | – | – | – | 509 | – | – | – | 0.2 | 5.5 | 4.7 |
Ppen13553_c0_seq1 | – | – | – | 116 | – | – | – | 0.9 | 23 | 5.2 |
Ppen17089_c0_seq1 | – | – | – | 233 | – | – | – | 2.6 | 3.9 | 2.1 |
Ppen8388_c0_seq1 | – | – | – | 94 | – | – | – | 1.1 | 19.1 | 38.3 |
Ppen12616_c0_seq1 | – | – | – | 76 | – | – | – | 11.8 | 9.2 | 2.6 |
Ppen15969_c0_seq2 | – | – | – | 438 | – | – | – | 0.7 | 6.8 | 3 |
Ppen13037_c0_seq1 | – | – | – | 127 | – | – | – | 0 | 5.5 | 4.7 |
Ppen20090_c0_seq1 | – | – | – | 128 | – | – | – | 0 | 21.1 | 10.2 |
Ppen8150_c0_seq1 | – | – | – | 270 | – | – | – | 0 | 9.3 | 6.3 |
Ppen11603_c0_seq1 | – | – | – | 632 | – | – | – | 0.2 | 10.1 | 4.7 |
Ppen3597_c0_seq1 | IPR000668 | Papain family cysteine protease | PF00112 | 375 | 116–370 | 153.4 | 8.60E-45 | 3.5 | 9.3 | 3.2 |
Ppen16202_c0_seq1 | – | – | – | 533 | – | – | – | 0 | 19.3 | 22.1 |
Ppen18231_c0_seq1 | – | – | – | 388 | – | – | – | 2.3 | 6.2 | 5.4 |
Ppen10194_c0_seq1 | – | – | – | 806 | – | – | – | 0.05 | 5.5 | 2.9 |
Ppen19584_c0_seq1 | – | – | – | 113 | – | – | – | 0 | 23.9 | 15.9 |
Ppen14923_c0_seq1 | IPR006377 | Domain of unknwon function DUF148 | PF02520.14 | 262 | 48–149 | 50 | 2.50E-13 | 0.1 | 16.8 | 5.3 |
Ppen13972_c0_seq1 | – | – | – | 141 | – | – | – | 1.4 | 7.1 | 2.8 |
Ppen16480_c0_seq1 | – | – | – | 727 | – | – | – | 0.06 | 3.2 | 10.5 |
Ppen28021_c0_seq1 | – | – | – | 121 | – | – | – | 2.5 | 11.6 | 16.5 |
Ppen15256_c0_seq1 | IPR010480 | Pepsin inhibitor-3-like repeated domain | PF06394.10 | 248 | 25–99 | 120–193 | 58.6 | 78.7 | 4.6E-16 | 2.5E-22 | 0.2 | 6.9 | 5.2 |
Ppen16504_c0_seq1 | IPR001506 | Astacin (Peptidase family M12A) | PF01400.21 | 564 | 189–383 | 156.8 | 4.20E-46 | 3 | 7.4 | 4.8 |
Ppen11417_c0_seq1 | – | – | – | 145 | – | – | – | 4.8 | 3.4 | 1.4 |
Ppen10830_c0_seq1 | – | – | – | 173 | – | – | – | 6.4 | 5.2 | 9.8 |
Ppen18503_c0_seq1 | – | – | – | 128 | – | – | – | 1.6 | 10.9 | 14.1 |
Ppen11174_c0_seq2 | – | – | – | 112 | – | – | – | 0.9 | 17.9 | 3.6 |
Ppen15571_c0_seq2 | – | – | – | 405 | – | – | – | 0.01 | 5.7 | 3.2 |