Table 1 The metabolic related differentially expressed genes (DEGs) identified in hepatopancreas of Scylla paramamosain under different light intensity by transcriptome

 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

Q9D8B4

0.4244

0.0069

0.3038

4.64E-05

 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

O97725

0.5027

0.0320

0.4272

0.0143

 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

Q9Z1P6

0.4448

0.0117

0.4501

0.0075

 NADH dehydrogenase [ubiquinone] 1 subunit C2

Q02827

0.5304

0.0372

0.3998

0.0007

 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

P0CB71

0.4975

0.0300

0.4757

0.0405

 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

Q02368

0.4824

0.0272

0.4284

0.0164

 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

Q02365

0.4691

0.0283

0.3656

0.0098

 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8

Q02372

0.4436

0.0078

0.3871

0.0028

 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

Q0MQC7

0.4078

0.0034

0.3620

0.0001

 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

Q9CXZ1

0.4943

0.0210

0.3934

0.0004

 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

O75251

0.4492

0.0101

0.3609

0.0006

 NADH-ubiquinone oxidoreductase chain 4 L

P18934

0.3750

0.0089

0.3079

0.0023

 NADH-ubiquinone oxidoreductase chain 6

P18933

0.3685

0.0005

0.2222

3.38E-09

 NADH-ubiquinone oxidoreductase chain 4

Q34048

0.3959

0.0099

0.1789

0.0487

 NADH-ubiquinone oxidoreductase chain 2

P34848

0.2425

0.0004

0.1031

0.0055

 NADH-ubiquinone oxidoreductase chain 3

P18930

0.2116

4.61E-05

0.2649

0.0001

 ATP synthase subunit beta

Q5ZLC5

0.5238

0.0250

0.4125

0.0004

 ATP synthase subunit g

Q5RFH0

0.3822

0.0011

0.3295

0.0001

 ATP synthase subunit gamma

O01666

0.5652

0.0488

0.4692

0.0028

 ATP synthase subunit d

Q24251

0.4474

0.0082

0.3143

0.0004

 ATP synthase subunit b

Q94516

0.5377

0.0353

0.4163

0.0007

 ATP synthase subunit delta

P35434

0.4663

0.0110

0.3982

0.0040

 ATP synthase-coupling factor 6

Q24407

0.5513

0.0446

0.4851

0.0045

 ATP synthase lipid-binding protein

Q9U505

0.5480

0.0355

0.1381

0.0260

 Cytochrome c oxidase subunit 6B1

P14854

0.4849

0.0155

0.4162

0.0036

 Cytochrome c oxidase subunit 1

P00399

0.4428

0.0028

0.1772

1.59E-05

 Cytochrome c oxidase subunit 3

P00417

0.3186

0.0002

0.2095

0.0002

 V-type proton ATPase subunit F

Q1HQK8

0.3166

9.16E-05

0.3091

0.0001

 V-type proton ATPase subunit e 2

Q8NHE4

0.4510

0.0203

0.2667

0.0004

 Inorganic pyrophosphatase

O77460

0.3413

0.0011

0.3730

0.0006

 Aldose 1-epimerase

Q9GKX6

0.4300

0.0136

0.5034

0.0424

 Phosphoglycerate kinase 1

Q5NVB5

0.4353

0.0035

0.4346

0.0010

 Enolase

P56252

0.3451

0.0003

0.4208

0.0014

 Glyceraldehyde-3-phosphate dehydrogenase

P56649

0.2565

0.0006

0.3811

0.0061

 Glucose-6-phosphatase

O42153

0.4234

0.0031

0.4551

0.0040

 Triosephosphate isomerase B

Q90XG0

0.3375

0.0002

0.3313

1.10E-05

 Acetyl-coenzyme A synthetase

Q9NR19

–

–

0.5993

0.0439

 L-lactate dehydrogenase

Q95028

–

–

0.5656

0.0288

 Pyruvate dehydrogenase protein X component

Q8BKZ9

–

–

0.4991

0.0309

 Hexokinase type 2

Q9NFT7

0.2888

0.0282

–

–

 Pyruvate dehydrogenase E1 component subunit beta

P49432

3.2622

0.0022

2.6429

0.0005

 Malate dehydrogenase

Q5NVR2

0.5229

0.0204

0.4403

0.0009

 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

P13086

0.5567

0.0452

0.4452

0.0016

 Malate dehydrogenase

Q3T145

0.3996

0.0010

0.4326

0.0006

 Cytoplasmic aconitate hydratase

Q0VCU1

0.4902

0.0109

0.5738

0.0262

 Isocitrate dehydrogenase [NADP]

Q04467

0.4560

0.0079

0.5210

0.0216

 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Q9D2G2

–

–

0.4379

0.0020

 Succinate dehydrogenase cytochrome b560 subunit

P70097

–

–

0.4841

0.0074

 Aconitate hydratase

Q99KI0

–

–

0.3799

0.0001

 Fumarate hydratase

Q60HF9

–

–

0.5111

0.0082

 ATP-citrate synthase

Q91V92

0.4900

0.0239

–

–

 Pyruvate carboxylase

Q29RK2

0.4938

0.0171

–

–

 Serine dehydratase-like

Q96GA7

0.4796

0.0457

0.3862

0.0043

 Glycine cleavage system H protein

P23434

0.3558

0.0003

0.3919

0.0002

 Phosphoglycerate mutase 2

Q32KV0

0.3546

0.0055

0.4024

0.0159

 Serine--pyruvate aminotransferase

P41689

0.4186

0.0181

0.1968

2.98E-05

 D-3-phosphoglycerate dehydrogenase

A5GFY8

0.3899

0.0042

0.3054

2.12E-05

 2-amino-3-ketobutyrate coenzyme A ligase

O75600

2.1360

0.0470

2.4998

0.0070

 Cystathionine gamma-lyase

Q8VCN5

4.0899

0.0094

16.1023

7.93E-05

 Peroxisomal sarcosine oxidase

Q29RU9

0.1632

2.73E-09

0.4559

0.0016

 Betaine--homocysteine S-methyltransferase 1

Q5XGM3

0.5321

0.0447

7.3483

0.0184

 Aldehyde dehydrogenase

P81178

0.2589

3.45E-06

0.4912

0.0037

 Cytosolic non-specific dipeptidase

Q96KP4

0.1312

0.0006

0.2145

0.0087

 Spermidine synthase

Q64674

0.5022

0.0310

0.5562

0.0409

 Enoyl-CoA hydratase

P14604

–

–

0.4812

0.0056

 Alpha-aminoadipic semialdehyde dehydrogenase

Q2KJC9

0.4374

0.0041

–

–

 Lysosomal thioesterase PPT2

O70489

3.4756

0.0236

3.1206

0.0462

 Lysosomal thioesterase PPT2-B

Q6GNY7

1.9706

0.0252

3.0013

1.27E-05

 3-ketoacyl-CoA thiolase

Q3T0R7

0.4633

0.0070

0.4285

0.0006

 Hydroxyacyl-coenzyme A dehydrogenase

Q16836

0.4400

0.0349

0.3574

0.0132

 Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial

P45954

–

–

0.5031

0.0261

 Aldehyde dehydrogenase family 9 member A1-A

Q7ZVB2

–

–

0.4922

0.0255

 Enoyl-CoA delta isomerase 2

Q9WUR2

–

–

0.4154

0.0024

 Glutaryl-CoA dehydrogenase

Q2KHZ9

–

–

0.5238

0.0112

 Long-chain specific acyl-CoA dehydrogenase

P51174

–

–

0.5771

0.0348

 Trifunctional enzyme subunit beta

Q99JY0

–

–

0.4686

0.0035

 Alcohol dehydrogenase class-3

P79896

0.3836

0.0010

0.4089

0.0005

 Fatty aldehyde dehydrogenase

P47740

0.3161

0.0193

–

–