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Table 2 Genes differentially expressed in dedifferentiated tissues compared to differentiated tissues in Eucalyptus

From: Transcriptome analysis identifies genes involved in the somatic embryogenesis of Eucalyptus

Gene family E. camaldulensis E. grandis x urophylla Shared E. camaldulensis only
Ethylene related 27/22a 16/37 15/17 12/5
Auxin 25/16 18/18 15/14 10/2
Ribosomal protein 15/86 41/8 12/6 3/80
Zinc finger protein 35/44 38/38 28/23 7/21
Heat shock protein 23/13 29/6 21/5 2/8
Histone 27/12 33/11 24/6 3/6
TF 155/117 128/143 95/79 60/38
ABA 3/5 5/4 3/2 0/3
AGP 5/3 4/6 2/3 3/0
Embryogenesis 8/3 5/3 3/2 5/1
Cell wall 154/120 131/120 86/66 68/54
  1. aMolecule and denominator represent the numbers of up- and down-regulated genes, respectively