Fig. 3
From: Red panda: a novel method for detecting variants in single-cell RNA sequencing
Variants in concordance with the exome and PPV for each tool. a The total number of variants in concordance with the exome for every cell as identified by each tool. Red Panda is characterized by three box plots: 1, 2, and all. Red Panda_1 contains variants exclusive to Red Panda logic: homozygous-looking variants and bimodally-distributed heterozygous variants. Red Panda_2 contains non-bimodally-distributed heterozygous variants that are called by GATK-HaplotypeCaller. Red Panda_all is a superset of the two. b The total number of heterozygous variants in concordance with the exome for every cell as identified by each tool. Red Panda is characterized by three box plots: 1, 2, and all. Red Panda_1 contains bimodally-distributed heterozygous variants. Red Panda_2 contains non-bimodally-distributed heterozygous variants. Red Panda_all is a superset of the two. c The average PPV calculated for each tool