Table 1 PPV and FDR for each tool
From: Red panda: a novel method for detecting variants in single-cell RNA sequencing
Algorithm | Average PPV (%) | Average FDR (%) |
|---|---|---|
FreeBayes | 8.69% ± 0.35% | 91.31% ± 0.35% |
GATK HaplotypeCaller | 31.67% ± 2.08% | 68.33% ± 2.08% |
GATK UnifiedGenotyper | 5.84% ± 0.45% | 94.16% ± 0.45% |
Monovar | 41.53% ± 0.29% | 58.47% ± 0.29% |
Platypus | 6.95% ± 0.49% | 93.05% ± 0.49% |
Red Panda | 44.96% ± 3.15% | 55.04% ± 3.15% |