Table 4 Experimental results for yeast ONT data set D2-O
From: A comprehensive evaluation of long read error correction methods
Method | # Reads | # Bases | # Aligned | # Aligned | Maximum | N50 | Genome | Alignment | CPU time | Wall time | Memory |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | (Mbp) | reads | bases (Mbp) | length (bp) | (bp) | fraction (%) | identity (%) | (hh:mm:ss) | (hh:mm:ss) | usage (GB) |
Original | 118723 | 715.7 | 108463 | 638.1 | 55374 | 7003 | 99.976 | 86.1986 | - | - | - |
Non-hybrid methods | |||||||||||
FLAS | 95606 | 585.6 | 95290 | 581.5 | 26592 | 6893 | 99.940 | 97.1699 | 07:42:10 | 07:42:10 | 4.4 |
LoRMA | 398863 | 497.0 | 398350 | 495.2 | 16027 | 1439 | 99.485 | 98.4024 | 68:02:36 | 02:55:05 | 68.8 |
Canu | 64829 | 475.1 | 64649 | 475.1 | 26895 | 7518 | 99.914 | 97.7710 | 12:31:04 | 00:37:53 | 9.0 |
Short-read-assembly-based methods | |||||||||||
HG-CoLoR | - | - | - | - | - | - | - | - | - | - | - |
FMLRC | 118701 | 713.7 | 111869 | 666.4 | 55374 | 6990 | 99.975 | 99.2529 | 03:35:44 | 00:17:21 | 2.2 |
HALC | 118707 | 718.2 | 114071 | 647.9 | 55379 | 7025 | 99.976 | 98.8884 | 50:11:58 | 04:03:18 | 3.6 |
Jabba | 99044 | 536.9 | 98631 | 535.9 | 28194 | 6730 | 95.400 | 99.9809 | 00:55:32 | 00:04:20 | 21.5 |
LoRDEC | 118727 | 720.8 | 110606 | 647.8 | 55375 | 7049 | 99.976 | 96.9369 | 11:22:09 | 00:26:13 | 2.1 |
ECTools | 81105 | 531.9 | 80843 | 529.3 | 26810 | 7071 | 99.314 | 99.7697 | 09:31:32 | 20:17:33 | 5.6 |
Short-read-alignment-based methods | |||||||||||
Hercules | 118721 | 716.3 | 108467 | 638.9 | 55374 | 7008 | 99.976 | 87.2912 | 125:22:19 | 04:37:01 | 246.6 |
CoLoRMap | 118774 | 722.0 | 108969 | 649.4 | 55374 | 7049 | 99.976 | 95.5851 | 11:01:38 | 01:34:52 | 27.8 |
Nanocorr | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
proovread | 118729 | 716.7 | 109057 | 643.4 | 55374 | 7007 | 99.976 | 96.3689 | 66:14:09 | 07:20:18 | 28.1 |
LSC | - | - | - | - | - | - | - | - | - | >72:00:00 | - |