Table 6 Experimental results for fruit fly ONT data set D3-O
From: A comprehensive evaluation of long read error correction methods
Method | # Reads | # Bases | # Aligned | # Aligned | Maximum | N50 | Genome | Alignment | CPU time | Wall time | Memory |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | (Mbp) | reads | bases (Mbp) | length (bp) | (bp) | fraction (%) | identity (%) | (hh:mm:ss) | (hh:mm:ss) | usage (GB) |
Original | 642255 | 4609.5 | 554083 | 3857.9 | 446050 | 11956 | 98.719 | 83.5921 | - | - | - |
Non-hybrid methods | |||||||||||
FLAS | 423097 | 3507.6 | 422206 | 3402.6 | 64365 | 11517 | 97.588 | 95.3301 | 23:04:50 | 03:12:50 | 10.8 |
LoRMA | 703097 | 615.5 | 682288 | 592.3 | 32644 | 865 | 30.338 | 98.1230 | 666:37:35 | 25:52:14 | 92.8 |
Canu | 430082 | 3415.6 | 421475 | 3220.2 | 254967 | 12090 | 97.592 | 96.3739 | 88:51:10 | 04:36:20 | 20.2 |
Short-read-assembly-based methods | |||||||||||
HG-CoLoR | - | - | - | - | - | - | - | - | - | - | - |
FMLRC | 641945 | 4647.2 | 578290 | 3978.2 | 444605 | 12088 | 98.592 | 97.6010 | 47:45:17 | 03:06:05 | 31.2 |
HALC | 643002 | 4668.5 | 611191 | 3955.7 | 451284 | 12115 | 98.616 | 97.6634 | 126:30:01 | 05:43:37 | 42.4 |
Jabba | 494546 | 2878.2 | 494430 | 2876.3 | 72501 | 9305 | 83.166 | 99.9745 | 175:19:34 | 06:56:29 | 136.8 |
LoRDEC | 642882 | 4655.9 | 567878 | 3921.1 | 447726 | 12079 | 98.691 | 94.0382 | 152:05:32 | 05:38:05 | 5.7 |
ECTools | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
Short-read-alignment-based methods | |||||||||||
Hercules | 642287 | 4612.8 | 554630 | 3859.4 | 449799 | 11966 | 98.713 | 83.9340 | 398:10:17 | 17:32:36 | 247.7 |
CoLoRMap | 649041 | 4692.1 | 565881 | 3963.8 | 442948 | 12050 | 98.715 | 94.3361 | 160:00:22 | 16:07:18 | 57.3 |
Nanocorr | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
proovread | - | - | - | - | - | - | - | - | - | >72:00:00 | - |
LSC | - | - | - | - | - | - | - | - | - | >72:00:00 | - |