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Table 1 Operations available in CAPRIB

From: CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution

Operation Definition Seta
I vs D Identical amino acids in group A that changed to a different amino acid in group B IA ∩ DB
IS vs D Identical or similar amino acids in group A that changed to a different amino acid in group B (IA SA) ∩ DB
I vs S Identical amino acids in group A that changed to a similar amino acid in group B IA ∩ SB
GapIn Gaps conserved in group A NA ∩ (SB DA)
GapOut Gaps conserved in group B (IA SA DA) ∩ OB
Stop codon Amino acids in group A replaced by a stop codon in group B (IA SA DA) ∩ PB
  1. asets of amino acid positions that are identical (I), similar (S), different (D), starting position of a gap in the reference organism (N), starting position of a gap in the compared organism (O) and the position of a stop codon (P)