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Fig. 7 | BMC Genomics

Fig. 7

From: Initial response of ovarian tissue transcriptome to vitrification or microwave-assisted dehydration in the domestic cat model

Fig. 7

Summarized overview using STRING network of differentially expressed genes from all comparison pairs. The network was built using 25 additional directly interacting proteins derived from STRING domestic cat database. Overview is presented in radial layout. MCL algorithm was used for clustering based on interaction score, with granularity set to 2 and edge cutoff to 0.4. Only clusters with genes that have more than three protein associations are presented. Each cluster was analyzed for functional enrichment within STRING app. Nodes are shaped according to the comparison pair source of differentially expressed genes. Nodes are colored according to the gene abundance (fold change) in comparison pair D10 vs. F; borders are colored according to the gene abundance (fold change) in comparison pair V vs. F. The confidence cutoff was set to 0.4, the confidence score of each interaction is mapped to the edge thickness. Additional file 10 contains the web session of the network for interactive view

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BMC Genomics

ISSN: 1471-2164

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