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Fig. 1 | BMC Genomics

Fig. 1

From: Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions

Fig. 1

Scatter plot of Variant Allele Frequency (VAF) data from GATK HaplotypeCaller. VAF is plotted on the x-axis. Black dots represent every predicted variant. The number of accessions predicted to harbor the variant is plotted on the y-axis. Data is plotted on the z-axis to separate different variants that share the same VAF and number of accessions. The percentage of the total data from VAF 0 to a specific frequency is overlaid in red. For example, 75% of all predicted nucleotide variants have a VAF of 0.05 or lower

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BMC Genomics

ISSN: 1471-2164

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