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Table 1 Genome assembly statistics of B. nigra (BB, n = 8) variety Sangam

From: A highly contiguous genome assembly of Brassica nigra (BB) and revised nomenclature for the pseudochromosomes

Oxford Nanopore

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BioNano

 

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Linkage Map

  

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Total assembly size (bp)

515,400,203

-

-

Number of contigs

1,549

-

-

Longest contig (bp)

17,509,570

-

-

N50 contig length (bp)

1,488,221

-

-

Number of scaffolds

-

15

-

Total scaffold size (bp)

-

506,396,041

-

Longest Scaffold

-

115,616,497

-

N50 scaffold length (bp)

-

68,578,869

-

Unscaffolded contigs

-

1,051(partial)

-

Number of pseudochromosomes/LGs

-

-

8

Scaffolds assigned to LGs

-

-

14

Contigs assigned to LGs

-

-

-

Unassigned scaffolds to LGs

-

-

-

Unassigned contigs to LGs

-

-

-

Length of assigned sequences to LGs (bp)

-

-

505,183,631

Length of unassigned sequences to LGs (bp)

-

-

30,296,383

N50 pseudochromosome length (bp)

-

-

63,988,665